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    5430400D12Rik RIKEN cDNA 5430400D12 gene [ Mus musculus (house mouse) ]

    Gene ID: 71339, updated on 8-Feb-2024

    Summary

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    Official Symbol
    5430400D12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5430400D12 geneprovided by MGI
    Primary source
    MGI:MGI:1918589
    See related
    AllianceGenome:MGI:1918589
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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    Genomic context

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    See 5430400D12Rik in Genome Data Viewer
    Location:
    7 D2; 7 45.27 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79570378..79576025)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79920649..79926277)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene mesoderm posterior 2 Neighboring gene alanyl aminopeptidase, membrane Neighboring gene STARR-seq mESC enhancer starr_19292 Neighboring gene adaptor-related protein complex 3, sigma 2 subunit Neighboring gene actin-related protein 2/3 complex inhibitor Neighboring gene STARR-seq mESC enhancer starr_19293 Neighboring gene predicted gene, 31966 Neighboring gene STARR-seq mESC enhancer starr_19295 Neighboring gene STARR-seq mESC enhancer starr_19296 Neighboring gene STARR-positive B cell enhancer ABC_E4939 Neighboring gene STARR-positive B cell enhancer ABC_E8970 Neighboring gene STARR-seq mESC enhancer starr_19297 Neighboring gene STARR-positive B cell enhancer ABC_E6561 Neighboring gene STARR-positive B cell enhancer ABC_E6562 Neighboring gene zinc finger protein 710 Neighboring gene STARR-positive B cell enhancer ABC_E6563 Neighboring gene predicted gene, 21057

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      79570378..79576025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003946805.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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