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    Mfsd11 major facilitator superfamily domain containing 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360667, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Mfsd11provided by RGD
    Official Full Name
    major facilitator superfamily domain containing 11provided by RGD
    Primary source
    RGD:1307394
    See related
    Ensembl:ENSRNOG00000000247 AllianceGenome:RGD:1307394
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307394
    Summary
    Predicted to be integral component of membrane. Orthologous to human MFSD11 (major facilitator superfamily domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 91.4), Adrenal (RPKM 70.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mfsd11 in Genome Data Viewer
    Location:
    10q32.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (102554409..102573866)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (102055516..102075064)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (105796108..105815696)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 23, arginine Neighboring gene serine and arginine rich splicing factor 2 Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B Neighboring gene uncharacterized LOC100912002 Neighboring gene small Cajal body-specific RNA 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    UNC93-like protein MFSD11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108308.1 → NP_001101778.1  UNC93-like protein MFSD11

      See identical proteins and their annotated locations for NP_001101778.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A0A8I6AUJ5, A6HL02, D3ZEI8
      Conserved Domains (1) summary
      pfam05978
      Location:14 → 166
      UNC-93; Ion channel regulatory protein UNC-93

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      102554409..102573866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006247810.4 → XP_006247872.1  UNC93-like protein MFSD11 isoform X1

      See identical proteins and their annotated locations for XP_006247872.1

      UniProtKB/TrEMBL
      A0A8I6AUJ5, A6HL02, D3ZEI8
      Related
      ENSRNOP00000000264.6
      Conserved Domains (1) summary
      pfam05978
      Location:14 → 166
      UNC-93; Ion channel regulatory protein UNC-93

    2. XM_006247809.5 → XP_006247871.1  UNC93-like protein MFSD11 isoform X1

      See identical proteins and their annotated locations for XP_006247871.1

      UniProtKB/TrEMBL
      A0A8I6AUJ5, A6HL02, D3ZEI8
      Conserved Domains (1) summary
      pfam05978
      Location:14 → 166
      UNC-93; Ion channel regulatory protein UNC-93

    3. XM_063269478.1 → XP_063125548.1  UNC93-like protein MFSD11 isoform X2

    4. XM_039086437.2 → XP_038942365.1  UNC93-like protein MFSD11 isoform X3

      Conserved Domains (1) summary
      cl28910
      Location:11 → 292
      MFS; Major Facilitator Superfamily

    5. XM_039086438.2 → XP_038942366.1  UNC93-like protein MFSD11 isoform X4

      Conserved Domains (1) summary
      cl28910
      Location:11 → 196
      MFS; Major Facilitator Superfamily

    6. XM_039086439.2 → XP_038942367.1  UNC93-like protein MFSD11 isoform X5

      Conserved Domains (1) summary
      cl28910
      Location:28 → 226
      MFS; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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