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    Teddm1a transmembrane epididymal protein 1A [ Mus musculus (house mouse) ]

    Gene ID: 240819, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Teddm1aprovided by MGI
    Official Full Name
    transmembrane epididymal protein 1Aprovided by MGI
    Primary source
    MGI:MGI:2668439
    See related
    Ensembl:ENSMUSG00000047053 AllianceGenome:MGI:2668439
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    e9-1; Epdd1; Teddm1
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TEDDM1 (transmembrane epididymal protein 1). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    1 G3; 1 65.43 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (153767481..153768809)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (153891646..153893060)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transmembrane epididymal family member 2 Neighboring gene STARR-seq mESC enhancer starr_02708 Neighboring gene transmembrane epididymal protein 1B Neighboring gene STARR-seq mESC enhancer starr_02709 Neighboring gene STARR-positive B cell enhancer ABC_E1568 Neighboring gene microRNA 8114 Neighboring gene glutamate-ammonia ligase Neighboring gene predicted gene, 30327

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane epididymal protein 1A
    Names
    epididymal protein e9-1
    transmembrane epididymal protein 1
    transmembrane epididymal protein 1-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178244.4 → NP_839975.2  transmembrane epididymal protein 1A

      Status: VALIDATED

      Source sequence(s)
      AC099702
      Consensus CDS
      CCDS15380.1
      UniProtKB/Swiss-Prot
      B9EJ62, Q2VP90, Q810U2
      UniProtKB/TrEMBL
      E9QLK8
      Related
      ENSMUSP00000062098.5, ENSMUST00000050660.6
      Conserved Domains (1) summary
      pfam04819
      Location:145 → 245
      DUF716; Family of unknown function (DUF716)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      153767481..153768809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q810U2.1 GenPept UniProtKB/Swiss-Prot:Q810U2

    Gene LinkOut

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