U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tafa2 TAFA chemokine like family member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680647, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Symbol
    Tafa2provided by RGD
    Full Name
    TAFA chemokine like family member 2provided by RGD
    Primary source
    RGD:1589429
    See related
    Ensembl:ENSRNOG00000064852 AllianceGenome:RGD:1589429
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam19a2
    Summary
    Predicted to enable receptor ligand activity. Predicted to be involved in memory and visual learning. Predicted to be located in cytoplasm and nucleus. Predicted to be active in extracellular space. Orthologous to human TAFA2 (TAFA chemokine like family member 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 41.4) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    7q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (60827985..61303873)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (58942598..59418640)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (66017066..66496690, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 15 Neighboring gene uncharacterized LOC134479703 Neighboring gene uncharacterized LOC134479705 Neighboring gene basic proline-rich protein-like Neighboring gene uncharacterized LOC120093624

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Tafa-2 plays an essential role in neuronal survival and neurobiological function in mice. Wang X, et al. Acta Biochim Biophys Sin (Shanghai), 2018 Oct 1. PMID 30137205, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables receptor ligand activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in memory ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in visual learning ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TAFA chemokine like family member 2; chemokine-like protein TAFA-2
    Names
    family with sequence similarity 19 (chemokine (C-C motif)-like), member A2
    family with sequence similarity 19 member A2, C-C motif chemokine like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      60827985..61303873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264598.1 → XP_063120668.1  chemokine-like protein TAFA-2 isoform X2

    2. XM_017595215.3 → XP_017450704.1  chemokine-like protein TAFA-2 isoform X1

      UniProtKB/TrEMBL
      A6HQP1

    3. XM_063264601.1 → XP_063120671.1  chemokine-like protein TAFA-2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZTJ1

    4. XM_063264600.1 → XP_063120670.1  chemokine-like protein TAFA-2 isoform X3

    5. XM_063264597.1 → XP_063120667.1  chemokine-like protein TAFA-2 isoform X1

    6. XM_063264599.1 → XP_063120669.1  chemokine-like protein TAFA-2 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.