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    1700030J22Rik RIKEN cDNA 1700030J22 gene [ Mus musculus (house mouse) ]

    Gene ID: 69528, updated on 30-Apr-2024

    Summary

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    Official Symbol
    1700030J22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700030J22 geneprovided by MGI
    Primary source
    MGI:MGI:1916778
    See related
    Ensembl:ENSMUSG00000031847 AllianceGenome:MGI:1916778
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human C16orf46 (chromosome 16 open reading frame 46). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 59.3) and CNS E18 (RPKM 2.0) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 E1; 8 63.41 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (117696333..117705741, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (116969594..116978959, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene C-X9-C motif containing 2 Neighboring gene centromere protein N Neighboring gene ATM interactor Neighboring gene STARR-positive B cell enhancer ABC_E2878 Neighboring gene STARR-positive B cell enhancer ABC_E6691 Neighboring gene STARR-positive B cell enhancer ABC_E3808 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) Neighboring gene STARR-seq mESC enhancer starr_22806 Neighboring gene polycystic kidney disease 1 like 2 Neighboring gene predicted gene, 31519

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C16orf46 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357253.1 → NP_001344182.1  uncharacterized protein C16orf46 homolog isoform a

      Status: VALIDATED

      Source sequence(s)
      AK031529, BC100501, BE979287
      Consensus CDS
      CCDS22695.1
      UniProtKB/Swiss-Prot
      Q810Q8, Q8BHB7, Q9D9R4
      UniProtKB/TrEMBL
      B9EHE0
      Related
      ENSMUSP00000148789.2, ENSMUST00000213068.2
      Conserved Domains (1) summary
      pfam15032
      Location:1 → 409
      DUF4529; Protein of unknown function (DUF4529)

    2. NM_001357254.1 → NP_001344183.1  uncharacterized protein C16orf46 homolog isoform a

      Status: VALIDATED

      Source sequence(s)
      AK031529, BE979287
      Consensus CDS
      CCDS22695.1
      UniProtKB/Swiss-Prot
      Q810Q8, Q8BHB7, Q9D9R4
      UniProtKB/TrEMBL
      B9EHE0
      Conserved Domains (1) summary
      pfam15032
      Location:1 → 409
      DUF4529; Protein of unknown function (DUF4529)

    3. NM_001357255.1 → NP_001344184.1  uncharacterized protein C16orf46 homolog isoform b

      Status: VALIDATED

      Source sequence(s)
      AK031529, BC049630, BC100501, BE979287
      Conserved Domains (1) summary
      pfam15032
      Location:1 → 302
      DUF4529; Protein of unknown function (DUF4529)

    4. NM_027103.3 → NP_081379.1  uncharacterized protein C16orf46 homolog isoform a

      See identical proteins and their annotated locations for NP_081379.1

      Status: VALIDATED

      Source sequence(s)
      AK030075, BC100501, BE979287
      Consensus CDS
      CCDS22695.1
      UniProtKB/Swiss-Prot
      Q810Q8, Q8BHB7, Q9D9R4
      UniProtKB/TrEMBL
      B9EHE0
      Related
      ENSMUSP00000070601.6, ENSMUST00000070577.7
      Conserved Domains (1) summary
      pfam15032
      Location:1 → 409
      DUF4529; Protein of unknown function (DUF4529)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      117696333..117705741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036154270.1 → XP_036010163.1  uncharacterized protein C16orf46 homolog isoform X1

      Conserved Domains (1) summary
      pfam15032
      Location:1 → 302
      DUF4529; Protein of unknown function (DUF4529)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BHB7.1 GenPept UniProtKB/Swiss-Prot:Q8BHB7

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