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    Stbd1 starch binding domain 1 [ Mus musculus (house mouse) ]

    Gene ID: 52331, updated on 8-May-2024

    Summary

    Official Symbol
    Stbd1provided by MGI
    Official Full Name
    starch binding domain 1provided by MGI
    Primary source
    MGI:MGI:1261768
    See related
    Ensembl:ENSMUSG00000047963 AllianceGenome:MGI:1261768
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D5Ertd593e; D530019K15Rik
    Summary
    Predicted to enable enzyme binding activity and glycogen binding activity. Involved in intracellular transport. Predicted to be located in T-tubule; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including diaphragm; genitourinary system; jaw; nasal capsule; and ventral grey horn. Orthologous to human STBD1 (starch binding domain 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in liver E18 (RPKM 28.8), bladder adult (RPKM 10.3) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    5 E2; 5 47.21 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92750910..92754438)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (92603051..92606579)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene scavenger receptor class B, member 2 Neighboring gene STARR-seq mESC enhancer starr_13641 Neighboring gene microRNA 6415 Neighboring gene STARR-seq mESC enhancer starr_13643 Neighboring gene STARR-positive B cell enhancer ABC_E10330 Neighboring gene STARR-seq mESC enhancer starr_13648 Neighboring gene family with sequence similarity 47, member E Neighboring gene VISTA enhancer mm187 Neighboring gene coiled-coil domain containing 158 Neighboring gene STARR-seq mESC enhancer starr_13649 Neighboring gene shroom family member 3 Neighboring gene STARR-seq mESC enhancer starr_13650 Neighboring gene STARR-seq mESC enhancer starr_13651 Neighboring gene microRNA 1961

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC148231, MGC148232

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables cargo receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables cargo receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables glycogen binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables polysaccharide binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in T-tubule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    starch-binding domain-containing protein 1
    Names
    genethonin 1
    glycophagy cargo receptor stbd1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175096.3NP_780305.1  starch-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_780305.1

      Status: PROVISIONAL

      Source sequence(s)
      AK050416
      Consensus CDS
      CCDS19433.1
      UniProtKB/Swiss-Prot
      Q147T8, Q8C7E7
      Related
      ENSMUSP00000054322.4, ENSMUST00000050952.4
      Conserved Domains (1) summary
      cd05813
      Location:244338
      CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      92750910..92754438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)