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    Marchf10 membrane associated ring-CH-type finger 10 [ Mus musculus (house mouse) ]

    Gene ID: 632687, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Marchf10provided by MGI
    Official Full Name
    membrane associated ring-CH-type finger 10provided by MGI
    Primary source
    MGI:MGI:2443469
    See related
    Ensembl:ENSMUSG00000078627 AllianceGenome:MGI:2443469
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rnf190; March10; 4933417C16Rik
    Summary
    Orthologous to human MARCHF10 (membrane associated ring-CH-type finger 10). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 88.2) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    11 E1; 11 68.73 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (105251624..105348527, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (105360798..105457701, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53649 Neighboring gene mannose receptor, C type 2 Neighboring gene STARR-positive B cell enhancer mm9_chr11:105209236-105209536 Neighboring gene uncharacterized LOC115487808 Neighboring gene predicted gene, 39417 Neighboring gene STARR-seq mESC enhancer starr_30908 Neighboring gene predicted gene, 35828 Neighboring gene predicted gene, 39422

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC118297

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase MARCHF10
    Names
    membrane-associated ring finger (C3HC4) 10
    ring finger protein 190
    NP_001034331.1
    NP_766156.2
    XP_006533967.1
    XP_006533968.1
    XP_030102075.1
    XP_030102076.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039242.3 → NP_001034331.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform 2

      See identical proteins and their annotated locations for NP_001034331.1

      Status: VALIDATED

      Source sequence(s)
      AL645684
      Consensus CDS
      CCDS25540.1
      UniProtKB/TrEMBL
      Q497L7
      Related
      ENSMUSP00000097906.4, ENSMUST00000100332.4

    2. NM_172568.3 → NP_766156.2  probable E3 ubiquitin-protein ligase MARCHF10 isoform 1

      See identical proteins and their annotated locations for NP_766156.2

      Status: VALIDATED

      Source sequence(s)
      AL645684
      Consensus CDS
      CCDS48955.1
      UniProtKB/TrEMBL
      E9PX79
      Related
      ENSMUSP00000063198.4, ENSMUST00000049995.10
      Conserved Domains (1) summary
      cd16813
      Location:639 → 698
      RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      105251624..105348527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533905.4 → XP_006533968.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X1

      See identical proteins and their annotated locations for XP_006533968.1

      UniProtKB/TrEMBL
      E9PX79
      Conserved Domains (1) summary
      cd16813
      Location:639 → 698
      RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

    2. XM_006533904.1 → XP_006533967.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X1

      See identical proteins and their annotated locations for XP_006533967.1

      UniProtKB/TrEMBL
      E9PX79
      Related
      ENSMUSP00000121919.2, ENSMUST00000138977.8
      Conserved Domains (1) summary
      cd16813
      Location:639 → 698
      RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

    3. XM_030246216.1 → XP_030102076.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X2

      UniProtKB/TrEMBL
      Q497L7

    4. XM_030246215.1 → XP_030102075.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X2

      UniProtKB/TrEMBL
      Q497L7
    Nucleotide Protein Strain
    Heading Accession and Version

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