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    IGLL3P immunoglobulin lambda like polypeptide 3, pseudogene [ Homo sapiens (human) ]

    Gene ID: 91353, updated on 10-Oct-2023

    Summary

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    Official Symbol
    IGLL3Pprovided by HGNC
    Official Full Name
    immunoglobulin lambda like polypeptide 3, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:5872
    See related
    AllianceGenome:HGNC:5872
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    16.1; IGLL3
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    22q11.23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (25318257..25320227)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (25779297..25781267)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (25714224..25716194)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene crystallin beta B2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:25673044-25673734 Neighboring gene uncharacterized LOC105372969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:25677730-25678664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:25678665-25679597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:25755899-25756398 Neighboring gene PHF10 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:25762910-25763736 Neighboring gene LDL receptor related protein 5 like (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:25779301-25779807 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:25781664-25782640 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:25788119-25789018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:25789019-25789917 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:25794389-25794888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18782 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18785 Neighboring gene Sharpr-MPRA regulatory region 13977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13559

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Physical location of the human immunoglobulin lambda-like genes, 14.1, 16.1, and 16.2. Bauer TR Jr, et al. Immunogenetics, 1993. PMID 8406611
    2. Genomic structure of the human Ig lambda 1 gene suggests that it may be expressed as an Ig lambda 14.1-like protein or as a canonical B cell Ig lambda light chain: implications for Ig lambda gene evolution. Evans RJ, et al. J Exp Med, 1991 Feb 1. PMID 1703205, Free PMC Article
    3. Identification of three new Ig lambda-like genes in man. Chang H, et al. J Exp Med, 1986 Feb 1. PMID 3003227, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • omega protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029395.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022324

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      25318257..25320227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      25779297..25781267
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013618.1: Suppressed sequence

      Description
      NM_001013618.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.