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    1700017N19Rik RIKEN cDNA 1700017N19 gene [ Mus musculus (house mouse) ]

    Gene ID: 66605, updated on 24-Apr-2024

    Summary

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    Official Symbol
    1700017N19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700017N19 geneprovided by MGI
    Primary source
    MGI:MGI:1913855
    See related
    Ensembl:ENSMUSG00000056912 AllianceGenome:MGI:1913855
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human C12orf50 (chromosome 12 open reading frame 50). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 20.9) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    10 D1; 10 51.51 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (100426346..100454257)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (100590484..100618395)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27735 Neighboring gene transmembrane and tetratricopeptide repeat containing 3 Neighboring gene centrosomal protein 290 Neighboring gene STARR-positive B cell enhancer mm9_chr10:100051814-100052115 Neighboring gene STARR-positive B cell enhancer mm9_chr10:100092429-100092730 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene STARR-seq mESC enhancer starr_27736 Neighboring gene STARR-seq mESC enhancer starr_27737 Neighboring gene predicted gene, 35722 Neighboring gene STARR-seq mESC enhancer starr_27738 Neighboring gene STARR-seq mESC enhancer starr_27739 Neighboring gene STARR-seq mESC enhancer starr_27740 Neighboring gene methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C12orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081246.2 → NP_001074715.1  uncharacterized protein C12orf50 homolog

      See identical proteins and their annotated locations for NP_001074715.1

      Status: VALIDATED

      Source sequence(s)
      AC153501
      Consensus CDS
      CCDS36047.1
      UniProtKB/TrEMBL
      A0A087WRQ1, D3YX67
      Related
      ENSMUSP00000042828.7, ENSMUST00000041162.13
      Conserved Domains (2) summary
      pfam15663
      Location:1 → 46
      zf-CCCH_3; Zinc-finger containing family
      pfam17732
      Location:66 → 415
      DUF5571; Family of unknown function (DUF5571)

    2. NM_001429354.1 → NP_001416283.1  uncharacterized protein C12orf50 homolog

      Status: VALIDATED

      Source sequence(s)
      AC153501

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      100426346..100454257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030245218.1 → XP_030101078.1  uncharacterized protein C12orf50 homolog isoform X1

      UniProtKB/TrEMBL
      A0A087WRQ1, D3YX67
      Related
      ENSMUSP00000151731.2, ENSMUST00000218464.2
      Conserved Domains (2) summary
      pfam15663
      Location:1 → 46
      zf-CCCH_3; Zinc-finger containing family
      pfam17732
      Location:66 → 415
      DUF5571; Family of unknown function (DUF5571)

    2. XM_006513956.3 → XP_006514019.1  uncharacterized protein C12orf50 homolog isoform X1

      See identical proteins and their annotated locations for XP_006514019.1

      UniProtKB/TrEMBL
      A0A087WRQ1, D3YX67
      Conserved Domains (2) summary
      pfam15663
      Location:1 → 46
      zf-CCCH_3; Zinc-finger containing family
      pfam17732
      Location:66 → 415
      DUF5571; Family of unknown function (DUF5571)

    3. XM_017314058.2 → XP_017169547.1  uncharacterized protein C12orf50 homolog isoform X2

      UniProtKB/TrEMBL
      A0A087WRQ1
      Related
      ENSMUSP00000141032.2, ENSMUST00000187119.7
      Conserved Domains (2) summary
      pfam15663
      Location:1 → 46
      zf-CCCH_3; Zinc-finger containing family
      pfam17732
      Location:66 → 414
      DUF5571; Family of unknown function (DUF5571)

    4. XM_006513955.3 → XP_006514018.1  uncharacterized protein C12orf50 homolog isoform X1

      See identical proteins and their annotated locations for XP_006514018.1

      UniProtKB/TrEMBL
      A0A087WRQ1, D3YX67
      Conserved Domains (2) summary
      pfam15663
      Location:1 → 46
      zf-CCCH_3; Zinc-finger containing family
      pfam17732
      Location:66 → 415
      DUF5571; Family of unknown function (DUF5571)
    Nucleotide Protein Strain
    Heading Accession and Version

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