U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C17h7orf25 similar to human chromosome 7 open reading frame 25 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307008, updated on 13-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C17h7orf25provided by RGD
    Official Full Name
    similar to human chromosome 7 open reading frame 25provided by RGD
    Primary source
    RGD:1308147
    See related
    Ensembl:ENSRNOG00000015523 AllianceGenome:RGD:1308147
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308147
    Summary
    Orthologous to human C7orf25 (chromosome 7 open reading frame 25). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 97.9), Kidney (RPKM 96.3) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    17q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (55238751..55245399, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (50543231..50549880, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (53080629..53087335, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene HCLS1 associated protein X-1, pseudogene 1 Neighboring gene heat shock protein family D (Hsp60) member 1, pseudogene 3 Neighboring gene proteasome 20S subunit alpha 2 Neighboring gene mitochondrial ribosomal protein L32

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC105979

    General protein information

    Go to the top of the page Help
    Preferred Names
    UPF0415 protein C7orf25 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014010.2 → NP_001014032.1  UPF0415 protein C7orf25 homolog

      See identical proteins and their annotated locations for NP_001014032.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A0A8I6AA39, A6K9C0
      Conserved Domains (1) summary
      pfam07000
      Location:38 → 401
      DUF1308; Protein of unknown function (DUF1308)

    2. NM_001419483.1 → NP_001406412.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A6K9C0
      Related
      ENSRNOP00000020794.4, ENSRNOT00000020794.6

    3. NM_001419484.1 → NP_001406413.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A6K9C0
      Related
      ENSRNOP00000096046.1, ENSRNOT00000114059.1

    4. NM_001419485.1 → NP_001406414.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A6K9C0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      55238751..55245399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5M888.1 GenPept UniProtKB/Swiss-Prot:Q5M888

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous