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    LOC101927588 uncharacterized LOC101927588 [ Homo sapiens (human) ]

    Gene ID: 101927588, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101927588
    Gene description
    uncharacterized LOC101927588
    See related
    Ensembl:ENSG00000214803
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    8q24.13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (124192691..124247398, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (125325124..125379852, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (125204932..125259639, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene FER1L6 antisense RNA 2 Neighboring gene neuropilin and tolloid like 2 pseudogene Neighboring gene ADP ribosylation factor 1 pseudogene 3 Neighboring gene uncharacterized LOC124902015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19507 Neighboring gene Sharpr-MPRA regulatory region 14070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27880 Neighboring gene RNA, U6 small nuclear 756, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:125283358-125284557 Neighboring gene transcription factor SOX-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125420.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090921
      Related
      ENST00000523703.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      124192691..124247398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      125325124..125379852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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