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    Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 [ Mus musculus (house mouse) ]

    Gene ID: 11941, updated on 21-Apr-2024

    Summary

    Official Symbol
    Atp2b2provided by MGI
    Official Full Name
    ATPase, Ca++ transporting, plasma membrane 2provided by MGI
    Primary source
    MGI:MGI:105368
    See related
    Ensembl:ENSMUSG00000030302 AllianceGenome:MGI:105368
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tmy; dfw; jog; wms; wri; PMCA2; D6Abb2e; Gena300
    Summary
    Enables calcium-dependent ATPase activity. Involved in cochlea development and regulation of cytosolic calcium ion concentration. Acts upstream of or within several processes, including animal organ development; cGMP metabolic process; and detection of mechanical stimulus involved in sensory perception of sound. Located in several cellular components, including apical plasma membrane; endoplasmic reticulum; and neuronal cell body. Is expressed in heart; labyrinthine zone; liver; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 12. Orthologous to human ATP2B2 (ATPase plasma membrane Ca2+ transporting 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cortex adult (RPKM 49.9), cerebellum adult (RPKM 49.7) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    6 E3; 6 52.85 cM
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113720803..114019574, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113743831..114042613, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ghrelin Neighboring gene SEC13 homolog, nuclear pore and COPII coat complex component Neighboring gene STARR-seq mESC enhancer starr_17054 Neighboring gene STARR-seq mESC enhancer starr_17055 Neighboring gene predicted gene 15083 Neighboring gene STARR-seq mESC enhancer starr_17060 Neighboring gene predicted gene, 36023 Neighboring gene solute carrier family 6 (neurotransmitter transporter, GABA), member 11 Neighboring gene predicted gene, 52916

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables P-type calcium transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables P-type calcium transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables P-type calcium transporter activity TAS
    Traceable Author Statement
    more info
     
    enables P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration ISO
    Inferred from Sequence Orthology
    more info
     
    enables PDZ domain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables PDZ domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables calcium-dependent ATPase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables calmodulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables glutamate receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within auditory receptor cell stereocilium organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cGMP metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within calcium ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cerebellar Purkinje cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cerebellar Purkinje cell layer morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cerebellar granule cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cerebellum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cochlea development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within detection of mechanical stimulus involved in sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within establishment of localization in cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within inner ear development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within inner ear morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within inner ear receptor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within intracellular calcium ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within lactation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within locomotion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within locomotory behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within neuromuscular process controlling balance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within neuron cellular homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in neuron differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within organelle organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within otolith mineralization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of calcium ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of cell size IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of cytosolic calcium ion concentration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of cytosolic calcium ion concentration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of cytosolic calcium ion concentration ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of synaptic plasticity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within sensory perception of sound IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in sensory perception of sound ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within serotonin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within synapse organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in GABA-ergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic spine membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in neuron projection IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in parallel fiber to Purkinje cell synapse ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in photoreceptor ribbon synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    is_active_in postsynaptic density membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in postsynaptic density membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynaptic membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in presynaptic active zone membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in presynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    plasma membrane calcium-transporting ATPase 2
    Names
    deaf waddler
    plasma membrane calcium ATPase
    plasma membrane calcium pump
    wriggle
    NP_001031761.1
    NP_001334294.1
    NP_001396452.1
    NP_001396453.1
    NP_001396455.1
    NP_001396458.1
    NP_001396462.1
    NP_001396463.1
    NP_001396464.1
    NP_001396465.1
    NP_001396466.1
    NP_033853.1
    XP_011239463.1
    XP_011239464.1
    XP_011239468.1
    XP_011239469.1
    XP_011239470.1
    XP_011239471.1
    XP_011239472.1
    XP_030110979.1
    XP_030110980.1
    XP_030110982.1
    XP_036021655.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001036684.4NP_001031761.1  plasma membrane calcium-transporting ATPase 2 isoform 1

      See identical proteins and their annotated locations for NP_001031761.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding region, compared to variant 3. These differences result in a shorter protein (isoform 1), compared to isoform 2. Variants 1, 2, 6, and 7 all encode the same isoform (1).
      Source sequence(s)
      AC117596
      Consensus CDS
      CCDS20433.1
      UniProtKB/Swiss-Prot
      O88863, Q9R0K7
      UniProtKB/TrEMBL
      D5L240, Q3UHJ3
      Related
      ENSMUSP00000086398.6, ENSMUST00000089003.12
      Conserved Domains (2) summary
      TIGR01517
      Location:121042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10811127
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    2. NM_001347365.2NP_001334294.1  plasma membrane calcium-transporting ATPase 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) encodes isoform 2. Variants 3 and 4 both encode the same isoform (2).
      Source sequence(s)
      AC117596, AC153590
      Consensus CDS
      CCDS85130.1
      UniProtKB/TrEMBL
      D5L240, F8WHB1
      Related
      ENSMUSP00000098605.3, ENSMUST00000101044.9
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261172
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    3. NM_001409523.1NP_001396452.1  plasma membrane calcium-transporting ATPase 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC117596
      UniProtKB/TrEMBL
      F8WHB1
    4. NM_001409524.1NP_001396453.1  plasma membrane calcium-transporting ATPase 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC117596, AC153590
    5. NM_001409526.1NP_001396455.1  plasma membrane calcium-transporting ATPase 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117596, AC153590
      UniProtKB/Swiss-Prot
      O88863, Q9R0K7
      UniProtKB/TrEMBL
      Q3UHJ3
    6. NM_001409529.1NP_001396458.1  plasma membrane calcium-transporting ATPase 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117596, AC153590
      UniProtKB/Swiss-Prot
      O88863, Q9R0K7
      UniProtKB/TrEMBL
      Q3UHJ3
    7. NM_001409533.1NP_001396462.1  plasma membrane calcium-transporting ATPase 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC117596
      UniProtKB/TrEMBL
      Q3UHH0
      Related
      ENSMUSP00000145174.2, ENSMUST00000205052.3
    8. NM_001409534.1NP_001396463.1  plasma membrane calcium-transporting ATPase 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC117596
    9. NM_001409535.1NP_001396464.1  plasma membrane calcium-transporting ATPase 2 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC117596
    10. NM_001409536.1NP_001396465.1  plasma membrane calcium-transporting ATPase 2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC117596
      UniProtKB/TrEMBL
      S4R1C4
    11. NM_001409537.1NP_001396466.1  plasma membrane calcium-transporting ATPase 2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC117596
      UniProtKB/TrEMBL
      S4R1C4
    12. NM_009723.7NP_033853.1  plasma membrane calcium-transporting ATPase 2 isoform 1

      See identical proteins and their annotated locations for NP_033853.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR and coding region, compared to variant 3. These differences result in a shorter protein (isoform 1), compared to isoform 2. Variants 1, 2, 6, and 7 all encode the same isoform (1).
      Source sequence(s)
      AC117596, AC153590
      Consensus CDS
      CCDS20433.1
      UniProtKB/Swiss-Prot
      O88863, Q9R0K7
      UniProtKB/TrEMBL
      D5L240, Q3UHJ3
      Related
      ENSMUSP00000098606.4, ENSMUST00000101045.10
      Conserved Domains (2) summary
      TIGR01517
      Location:121042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10811127
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    RNA

    1. NR_176856.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117596, AC153590

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      113720803..114019574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241161.1XP_011239463.1  plasma membrane calcium-transporting ATPase 2 isoform X1

      See identical proteins and their annotated locations for XP_011239463.1

      UniProtKB/TrEMBL
      D5L240, F8WHB1
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261172
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    2. XM_011241167.3XP_011239469.1  plasma membrane calcium-transporting ATPase 2 isoform X4

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261168
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    3. XM_011241168.2XP_011239470.1  plasma membrane calcium-transporting ATPase 2 isoform X5

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261168
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    4. XM_030255122.2XP_030110982.1  plasma membrane calcium-transporting ATPase 2 isoform X10

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261201
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    5. XM_011241162.4XP_011239464.1  plasma membrane calcium-transporting ATPase 2 isoform X1

      See identical proteins and their annotated locations for XP_011239464.1

      UniProtKB/TrEMBL
      D5L240, F8WHB1
      Conserved Domains (2) summary
      TIGR01517
      Location:121087
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11261172
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    6. XM_011241166.4XP_011239468.1  plasma membrane calcium-transporting ATPase 2 isoform X3

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121056
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10951141
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    7. XM_030255120.2XP_030110980.1  plasma membrane calcium-transporting ATPase 2 isoform X3

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121056
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10951141
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    8. XM_030255119.2XP_030110979.1  plasma membrane calcium-transporting ATPase 2 isoform X2

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121073
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:11121158
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    9. XM_036165762.1XP_036021655.1  plasma membrane calcium-transporting ATPase 2 isoform X9

      UniProtKB/TrEMBL
      D5L240, S4R1C4
      Related
      ENSMUSP00000138165.2, ENSMUST00000152831.8
      Conserved Domains (2) summary
      TIGR01517
      Location:121042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10811123
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    10. XM_011241170.2XP_011239472.1  plasma membrane calcium-transporting ATPase 2 isoform X8

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10811123
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    11. XM_011241169.3XP_011239471.1  plasma membrane calcium-transporting ATPase 2 isoform X7

      UniProtKB/TrEMBL
      D5L240
      Conserved Domains (2) summary
      TIGR01517
      Location:121056
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:10951137
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    RNA

    1. XR_868849.2 RNA Sequence

    2. XR_001785094.3 RNA Sequence