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    D430020J02Rik RIKEN cDNA D430020J02 gene [ Mus musculus (house mouse) ]

    Gene ID: 319545, updated on 8-Feb-2024

    Summary

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    Official Symbol
    D430020J02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D430020J02 geneprovided by MGI
    Primary source
    MGI:MGI:2442237
    See related
    Ensembl:ENSMUSG00000112980 AllianceGenome:MGI:2442237
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in liver E14.5 (RPKM 3.9), liver E14 (RPKM 3.4) and 21 other tissues See more
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    Genomic context

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    Location:
    12 F2; 12 62.65 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (116365567..116368781, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (116401947..116405161, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene dynein 2 intermediate chain 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:117519461-117519695 Neighboring gene extended synaptotagmin-like protein 2 Neighboring gene RIKEN cDNA 2310058N22 gene Neighboring gene STARR-positive B cell enhancer ABC_E4047 Neighboring gene non-SMC condensin II complex, subunit G2 Neighboring gene STARR-seq mESC enhancer starr_33404 Neighboring gene predicted gene, 25112

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028421.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK084974, AK085139, AK085944
      Related
      ENSMUST00000220477.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      116365567..116368781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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