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    Hax1 HCLS1 associated X-1 [ Mus musculus (house mouse) ]

    Gene ID: 23897, updated on 2-May-2024

    Summary

    Official Symbol
    Hax1provided by MGI
    Official Full Name
    HCLS1 associated X-1provided by MGI
    Primary source
    MGI:MGI:1346319
    See related
    Ensembl:ENSMUSG00000027944 AllianceGenome:MGI:1346319
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HAX-1; Hs1bp1; SIG-111; Silg111; mHAX-1s; HSP1BP-1
    Summary
    Predicted to enable interleukin-1 binding activity; protein N-terminus binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including positive regulation of intracellular signal transduction; positive regulation of protein phosphorylation; and regulation of actin cytoskeleton organization. Predicted to act upstream of or within cell surface receptor signaling pathway. Located in several cellular components, including actin cytoskeleton; lamellipodium; and sarcoplasmic reticulum. Is expressed in coelomic epithelium of testis; ovary; and testis mesenchyme. Human ortholog(s) of this gene implicated in severe congenital neutropenia 3. Orthologous to human HAX1 (HCLS1 associated protein X-1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 37.5), testis adult (RPKM 25.3) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    3 F1; 3 39.19 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (89902753..89906023, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (89995446..89998716, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ATPase, class I, type 8B, member 2 Neighboring gene STARR-positive B cell enhancer ABC_E7921 Neighboring gene STARR-positive B cell enhancer ABC_E7922 Neighboring gene aquaporin 10, pseudogene Neighboring gene predicted gene, 24046 Neighboring gene STARR-positive B cell enhancer ABC_E4557 Neighboring gene predicted gene, 19710 Neighboring gene ubiquitin-associated protein 2-like Neighboring gene predicted gene, 24608

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables interleukin-1 binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables signaling adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in actin cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in apical plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in clathrin-coated vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in clathrin-coated vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lamellipodium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial intermembrane space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in sarcoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in sarcoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sarcoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    part_of transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    HCLS1-associated protein X-1
    Names
    HS1 binding protein
    HS1-associated protein X-1
    HS1-associating protein X-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282032.2NP_001268961.1  HCLS1-associated protein X-1 isoform 2

      See identical proteins and their annotated locations for NP_001268961.1

      Status: VALIDATED

      Source sequence(s)
      AC163616
      Consensus CDS
      CCDS79957.1
      UniProtKB/TrEMBL
      A0A0G2JE46, Q3UXX9, Q8R5I5
      Related
      ENSMUSP00000142627.2, ENSMUST00000197786.5
    2. NM_001310681.2NP_001297610.1  HCLS1-associated protein X-1 isoform 3

      See identical proteins and their annotated locations for NP_001297610.1

      Status: VALIDATED

      Source sequence(s)
      AC163616
      Consensus CDS
      CCDS79956.1
      UniProtKB/TrEMBL
      A0A0G2JFF9
    3. NM_001428785.1NP_001415714.1  HCLS1-associated protein X-1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC163616
    4. NM_001428786.1NP_001415715.1  HCLS1-associated protein X-1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC163616
    5. NM_001428787.1NP_001415716.1  HCLS1-associated protein X-1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC163616
    6. NM_011826.5NP_035956.1  HCLS1-associated protein X-1 isoform 1

      See identical proteins and their annotated locations for NP_035956.1

      Status: VALIDATED

      Source sequence(s)
      AC163616
      Consensus CDS
      CCDS17519.1
      UniProtKB/Swiss-Prot
      O35387, Q542F8
      UniProtKB/TrEMBL
      B9EJR4
      Related
      ENSMUSP00000078661.5, ENSMUST00000079724.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      89902753..89906023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163091.1XP_036018984.1  HCLS1-associated protein X-1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JDP0
      Related
      ENSMUSP00000142445.2, ENSMUST00000197767.5
    2. XM_006501446.4XP_006501509.1  HCLS1-associated protein X-1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JFF9
    3. XM_036163092.1XP_036018985.1  HCLS1-associated protein X-1 isoform X3

    4. XM_017319570.3XP_017175059.1  HCLS1-associated protein X-1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JFF9
      Related
      ENSMUSP00000143155.2, ENSMUST00000198782.2