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    Tmem167b transmembrane protein 167B [ Mus musculus (house mouse) ]

    Gene ID: 67495, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tmem167bprovided by MGI
    Official Full Name
    transmembrane protein 167Bprovided by MGI
    Primary source
    MGI:MGI:1914745
    See related
    Ensembl:ENSMUSG00000068732 AllianceGenome:MGI:1914745
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2010200O16Rik
    Summary
    Predicted to be involved in constitutive secretory pathway. Predicted to be located in Golgi apparatus. Orthologous to human TMEM167B (transmembrane protein 167B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in bladder adult (RPKM 7.1), CNS E11.5 (RPKM 7.0) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    3 F3; 3 47.31 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108463741..108469782, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108556425..108562466, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4574 Neighboring gene cilia and flagella associated protein 276 Neighboring gene STARR-positive B cell enhancer ABC_E2679 Neighboring gene small Cajal body-specific RNA 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:108365309-108365496 Neighboring gene STARR-positive B cell enhancer ABC_E3459 Neighboring gene STARR-positive B cell enhancer ABC_E1629 Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene STARR-positive B cell enhancer ABC_E6105 Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in constitutive secretory pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026198.2NP_080474.2  protein kish-B precursor

      See identical proteins and their annotated locations for NP_080474.2

      Status: VALIDATED

      Source sequence(s)
      AK008415, AL683823, BQ560740
      Consensus CDS
      CCDS38601.1
      UniProtKB/Swiss-Prot
      Q3U299, Q80X45, Q8BL15, Q9D863
      Related
      ENSMUSP00000088035.6, ENSMUST00000090546.6
      Conserved Domains (1) summary
      pfam06842
      Location:1146
      DUF1242; Protein of unknown function (DUF1242)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      108463741..108469782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)