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    Chst9 carbohydrate sulfotransferase 9 [ Mus musculus (house mouse) ]

    Gene ID: 71367, updated on 11-Apr-2024

    Summary

    Official Symbol
    Chst9provided by MGI
    Official Full Name
    carbohydrate sulfotransferase 9provided by MGI
    Primary source
    MGI:MGI:1918617
    See related
    Ensembl:ENSMUSG00000047161 AllianceGenome:MGI:1918617
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GalNAc4ST-2; galNAc-4-ST2; 5430438D01Rik
    Summary
    Enables N-acetylgalactosamine 4-O-sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process and sulfur compound metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human CHST9 (carbohydrate sulfotransferase 9). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    Location:
    18 A1; 18 8.85 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (15584830..15893214, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (15451773..15760157, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A830021F12 gene Neighboring gene aquaporin 4 Neighboring gene fibrillarin pseudogene Neighboring gene STARR-seq mESC enhancer starr_43888 Neighboring gene STARR-seq mESC enhancer starr_43889 Neighboring gene predicted gene, 30452 Neighboring gene STARR-seq mESC enhancer starr_43890 Neighboring gene STARR-seq mESC enhancer starr_43891 Neighboring gene STARR-seq mESC enhancer starr_43892 Neighboring gene STARR-seq mESC enhancer starr_43893 Neighboring gene predicted gene, 54036 Neighboring gene STARR-seq mESC enhancer starr_43895 Neighboring gene ribosomal protein L11 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC130338

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables N-acetylgalactosamine 4-O-sulfotransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables N-acetylgalactosamine 4-O-sulfotransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables sulfotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in carbohydrate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in proteoglycan biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sulfur compound metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    carbohydrate sulfotransferase 9
    Names
    N-acetylgalactosamine-4-O-sulfotransferase 2
    carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
    galNAc-4-O-sulfotransferase 2
    NP_001351921.1
    NP_951010.1
    XP_017173481.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001364992.1NP_001351921.1  carbohydrate sulfotransferase 9 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC102397, AK017407
      UniProtKB/TrEMBL
      Q3KNB9
      Conserved Domains (1) summary
      pfam03567
      Location:133362
      Sulfotransfer_2; Sulfotransferase family
    2. NM_199055.3NP_951010.1  carbohydrate sulfotransferase 9 isoform 1

      See identical proteins and their annotated locations for NP_951010.1

      Status: VALIDATED

      Source sequence(s)
      AC102397, AC102416, AC157900
      Consensus CDS
      CCDS29074.1
      UniProtKB/Swiss-Prot
      Q76EC5
      UniProtKB/TrEMBL
      Q3KNB9
      Related
      ENSMUSP00000049975.7, ENSMUST00000053017.13
      Conserved Domains (1) summary
      pfam03567
      Location:179408
      Sulfotransfer_2; Sulfotransferase family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      15584830..15893214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317992.3XP_017173481.1  carbohydrate sulfotransferase 9 isoform X1

      UniProtKB/TrEMBL
      Q3KNB9
      Conserved Domains (1) summary
      pfam03567
      Location:115344
      Sulfotransfer_2; Sulfotransferase family