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    Spata31e3 spermatogenesis associated 31 subfamily E member 3 [ Mus musculus (house mouse) ]

    Gene ID: 380882, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Spata31e3provided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily E member 3provided by MGI
    Primary source
    MGI:MGI:2685752
    See related
    Ensembl:ENSMUSG00000095300 AllianceGenome:MGI:2685752
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm906
    Summary
    Orthologous to human SPATA31E1 (SPATA31 subfamily E member 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in kidney adult (RPKM 2.2) and testis adult (RPKM 1.4) See more
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    Genomic context

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    Location:
    13 A5; 13 25.64 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (50392811..50404395, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (50238775..50250359, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31217 Neighboring gene predicted gene, 29769 Neighboring gene RIKEN cDNA 2310081J21 gene Neighboring gene predicted gene, 31126

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC380882

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033438.2 → NP_001028610.1  uncharacterized protein LOC380882

      See identical proteins and their annotated locations for NP_001028610.1

      Status: PREDICTED

      Source sequence(s)
      AK133043
      Consensus CDS
      CCDS49262.1
      UniProtKB/TrEMBL
      Q3V0M1
      Related
      ENSMUSP00000097121.2, ENSMUST00000099521.2
      Conserved Domains (1) summary
      pfam14650
      Location:110 → 335
      FAM75; FAM75 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      50392811..50404395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516934.3 → XP_006516997.1  uncharacterized protein LOC380882 isoform X1

      Conserved Domains (1) summary
      pfam14650
      Location:110 → 386
      FAM75; FAM75 family

    2. XM_006516935.4 → XP_006516998.1  uncharacterized protein LOC380882 isoform X2

      Conserved Domains (1) summary
      pfam14650
      Location:110 → 386
      FAM75; FAM75 family
    Nucleotide Protein Strain
    Heading Accession and Version

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