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    Cdkn2aipnl CDKN2A interacting protein N-terminal like [ Mus musculus (house mouse) ]

    Gene ID: 52626, updated on 21-Apr-2024

    Summary

    Official Symbol
    Cdkn2aipnlprovided by MGI
    Official Full Name
    CDKN2A interacting protein N-terminal likeprovided by MGI
    Primary source
    MGI:MGI:1261797
    See related
    Ensembl:ENSMUSG00000020392 AllianceGenome:MGI:1261797
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNCb-1520; D11Ertd497e; A430101B06Rik
    Summary
    Predicted to be active in nucleolus and nucleoplasm. Orthologous to human CDKN2AIPNL (CDKN2A interacting protein N-terminal like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in thymus adult (RPKM 29.4), CNS E11.5 (RPKM 18.2) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    11 B1.3; 11 31.78 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51858458..51868163)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51967631..51977336)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39822 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51749624-51749825 Neighboring gene STARR-positive B cell enhancer ABC_E5224 Neighboring gene STARR-positive B cell enhancer ABC_E11478 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51762773-51762956 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51763076-51763185 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51763442-51763752 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51775297-51775573 Neighboring gene predicted gene, 26061 Neighboring gene STARR-seq mESC enhancer starr_29438 Neighboring gene ubiquitin-conjugating enzyme E2B Neighboring gene cyclin dependent kinase like 3 Neighboring gene STARR-seq mESC enhancer starr_29439 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51879429-51879612 Neighboring gene STARR-positive B cell enhancer ABC_E8875 Neighboring gene STARR-positive B cell enhancer ABC_E10674 Neighboring gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform Neighboring gene predicted gene, 30631

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    CDKN2AIP N-terminal-like protein
    Names
    CDKN2A-interacting protein N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029976.3NP_084252.1  CDKN2AIP N-terminal-like protein

      See identical proteins and their annotated locations for NP_084252.1

      Status: VALIDATED

      Source sequence(s)
      AK150573, BQ032176, BY088687
      Consensus CDS
      CCDS24663.1
      UniProtKB/Swiss-Prot
      B1AU49, Q9D211
      Related
      ENSMUSP00000099824.5, ENSMUST00000102763.5
      Conserved Domains (1) summary
      pfam11952
      Location:25113
      XTBD; XRN-Two Binding Domain, XTBD

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      51858458..51868163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)