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    Slc23a4 solute carrier family 23 member 4 [ Mus musculus (house mouse) ]

    Gene ID: 243753, updated on 2-May-2024

    Summary

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    Official Symbol
    Slc23a4provided by MGI
    Official Full Name
    solute carrier family 23 member 4provided by MGI
    Primary source
    MGI:MGI:1917272
    See related
    Ensembl:ENSMUSG00000029847 AllianceGenome:MGI:1917272
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm468; 2010107G12Rik
    Summary
    Orthologous to human SLC23A4P (solute carrier family 23 member 4, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in small intestine adult (RPKM 30.9), large intestine adult (RPKM 17.8) and 4 other tissues See more
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    Genomic context

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    Location:
    6 B1; 6 15.2 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (34922221..34965430, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (34945286..34988495, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr6:34860831-34861132 Neighboring gene WD repeat domain 91 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:34902551-34902660 Neighboring gene stimulated by retinoic acid gene 8 Neighboring gene CCR4-NOT transcription complex, subunit 4 Neighboring gene STARR-seq mESC enhancer starr_15552 Neighboring gene STARR-positive B cell enhancer ABC_E2779 Neighboring gene predicted gene, 33046 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:35141265-35141448 Neighboring gene nucleoporin 205 Neighboring gene STARR-seq mESC enhancer starr_15553 Neighboring gene predicted gene, 23435

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Endonuclease-mediated (3) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC243753

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025573.2 → NP_001020744.2  uncharacterized protein LOC243753

      Status: VALIDATED

      Source sequence(s)
      AC153869, BC075651
      Consensus CDS
      CCDS19998.1
      UniProtKB/TrEMBL
      E9PW54, Q6DIB3
      Related
      ENSMUSP00000041436.8, ENSMUST00000044387.14
      Conserved Domains (1) summary
      cl23746
      Location:34 → 274
      HCO3_cotransp; HCO3- transporter family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      34922221..34965430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506134.4 → XP_006506197.1  uncharacterized protein LOC243753 isoform X1

      UniProtKB/TrEMBL
      A0A0J9YUX7
      Related
      ENSMUSP00000144387.2, ENSMUST00000201355.4
      Conserved Domains (1) summary
      pfam00860
      Location:58 → 488
      Xan_ur_permease; Permease family

    2. XM_006506135.5 → XP_006506198.1  uncharacterized protein LOC243753 isoform X2

      Conserved Domains (1) summary
      cl23746
      Location:8 → 188
      Xan_ur_permease; Permease family
    Nucleotide Protein Strain
    Heading Accession and Version

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