U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SPCC13B11.04c putative glutathione-dependent formaldehyde dehydrogenase [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538802, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SPCC13B11.04c
    Gene description
    putative glutathione-dependent formaldehyde dehydrogenase
    Primary source
    PomBase:SPCC13B11.04c
    Locus tag
    SPCC13B11.04c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003421.2 (1596549..1599028, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene alcohol dehydrogenase Adh1 Neighboring gene miscRNA Neighboring gene putative hydroxyacylglutathione hydrolase Neighboring gene putative transcription factor Neighboring gene miscRNA Neighboring gene putative cysteine desulfurase nifs family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables S-(hydroxymethyl)glutathione dehydrogenase (NAD(P)+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables alcohol dehydrogenase (NAD+) activity, zinc-dependent IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydroxymethylfurfural reductase (NADH) activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid catabolic process to alcohol via Ehrlich pathway ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in formaldehyde catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in furaldehyde metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative glutathione-dependent formaldehyde dehydrogenase
    NP_588247.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1596549..1599028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023237.2 → NP_588247.1  putative glutathione-dependent formaldehyde dehydrogenase [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588247.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74540
      Conserved Domains (2) summary
      cd08300
      Location:11 → 377
      alcohol_DH_class_III; class III alcohol dehydrogenases
      COG1062
      Location:11 → 379
      FrmA; Zn-dependent alcohol dehydrogenase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous