U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Hnrnpl heterogeneous nuclear ribonucleoprotein L [ Mus musculus (house mouse) ]

    Gene ID: 15388, updated on 21-Apr-2024

    Summary

    Official Symbol
    Hnrnplprovided by MGI
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Lprovided by MGI
    Primary source
    MGI:MGI:104816
    See related
    Ensembl:ENSMUSG00000015165 AllianceGenome:MGI:104816
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hnrpl; D830027H13Rik
    Summary
    Enables RNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome. Located in pronucleus. Is expressed in several structures, including central nervous system; early conceptus; sensory organ; tail unsegmented mesenchyme; and tooth. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 136.9), limb E14.5 (RPKM 90.8) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    7 B1; 7 16.93 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (28507971..28521693)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (28808546..28822268)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene sirtuin 2 Neighboring gene predicted gene, 19897 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:29565175-29565376 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:29565964-29566190 Neighboring gene STARR-positive B cell enhancer ABC_E6528 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:29577451-29577634 Neighboring gene Ras and Rab interactor-like Neighboring gene nuclear encoded tRNA lysine 24 (anticodon TTT) Neighboring gene STARR-seq mESC enhancer starr_18438 Neighboring gene STARR-positive B cell enhancer ABC_E156 Neighboring gene STARR-positive B cell enhancer ABC_E8158 Neighboring gene STARR-seq mESC enhancer starr_18440 Neighboring gene enoyl coenzyme A hydratase 1, peroxisomal Neighboring gene lectin, galactose binding, soluble 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA CDS binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables pre-mRNA intronic binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription cis-regulatory region binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribonucleoprotein granule ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    heterogeneous nuclear ribonucleoprotein L
    Names
    hnRNP L

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402935.1NP_001389864.1  heterogeneous nuclear ribonucleoprotein L isoform a

      Status: VALIDATED

      Source sequence(s)
      AC171210
      Related
      ENSMUSP00000134734.2, ENSMUST00000174477.8
    2. NM_001402936.1NP_001389865.1  heterogeneous nuclear ribonucleoprotein L isoform c

      Status: VALIDATED

      Source sequence(s)
      AC171210
      Conserved Domains (1) summary
      TIGR01649
      Location:1491
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    3. NM_001402937.1NP_001389866.1  heterogeneous nuclear ribonucleoprotein L isoform c

      Status: VALIDATED

      Source sequence(s)
      AC171210
      Conserved Domains (1) summary
      TIGR01649
      Location:1491
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    4. NM_001402938.1NP_001389867.1  heterogeneous nuclear ribonucleoprotein L isoform d

      Status: VALIDATED

      Source sequence(s)
      AC171210
      UniProtKB/TrEMBL
      G3UY38
      Related
      ENSMUSP00000133932.2, ENSMUST00000172529.8
    5. NM_001402939.1NP_001389868.1  heterogeneous nuclear ribonucleoprotein L isoform d

      Status: VALIDATED

      Source sequence(s)
      AC171210
      UniProtKB/TrEMBL
      G3UY38
    6. NM_177301.6NP_796275.3  heterogeneous nuclear ribonucleoprotein L isoform b

      See identical proteins and their annotated locations for NP_796275.3

      Status: VALIDATED

      Source sequence(s)
      AC171210
      Consensus CDS
      CCDS39864.2
      UniProtKB/Swiss-Prot
      O54789, Q499X2, Q8K0S7, Q8R081
      UniProtKB/TrEMBL
      Q3UMT7
      Related
      ENSMUSP00000133728.2, ENSMUST00000174548.8
      Conserved Domains (1) summary
      TIGR01649
      Location:97584
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    RNA

    1. NR_175319.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC171210
    2. NR_175320.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC171210
      Related
      ENSMUST00000174882.8
    3. NR_175321.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC171210
    4. NR_175322.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC171210
    5. NR_175323.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC171210

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      28507971..28521693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539560.2XP_006539623.1  heterogeneous nuclear ribonucleoprotein L isoform X5

      Conserved Domains (1) summary
      TIGR01649
      Location:97291
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    2. XM_036152696.1XP_036008589.1  heterogeneous nuclear ribonucleoprotein L isoform X6

      Conserved Domains (1) summary
      TIGR01649
      Location:97292
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    RNA

    1. XR_003946390.1 RNA Sequence

    2. XR_004934017.1 RNA Sequence