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    Tcte2 t-complex-associated testis expressed 2 [ Mus musculus (house mouse) ]

    Gene ID: 21646, updated on 27-Feb-2024

    Summary

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    Official Symbol
    Tcte2provided by MGI
    Official Full Name
    t-complex-associated testis expressed 2provided by MGI
    Primary source
    MGI:MGI:98641
    See related
    Ensembl:ENSMUSG00000038347 AllianceGenome:MGI:98641
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tcte-2
    Summary
    Is expressed in central nervous system; neural retina; pancreas; and testis. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 96.4) and lung adult (RPKM 1.7) See more
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    Genomic context

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    See Tcte2 in Genome Data Viewer
    Location:
    17 A1; 17 8.9 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (13936698..13981665, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (13716436..13761403, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41530 Neighboring gene STARR-seq mESC enhancer starr_41878 Neighboring gene predicted gene, 24867 Neighboring gene afadin, adherens junction formation factor Neighboring gene STARR-seq mESC enhancer starr_41882 Neighboring gene STARR-seq mESC enhancer starr_41883 Neighboring gene STARR-seq mESC enhancer starr_41885 Neighboring gene predicted gene 7168 Neighboring gene predicted gene, 33889

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse chromosome 17. Artzt K, et al. Mamm Genome, 1991. PMID 1799805
    2. Identification of a male meiosis-specific gene, Tcte2, which is differentially spliced in species that form sterile hybrids with laboratory mice and deleted in t chromosomes showing meiotic drive. Braidotti G, et al. Dev Biol, 1997 Jun 1. PMID 9188755
    3. Overview of inactivating mutations in the protein-coding genome of the mouse reference strain C57BL/6J. Timmermans S, et al. JCI Insight, 2018 Jul 12. PMID 29997285, Free PMC Article
    4. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells. Lawson KA, et al. Nature, 2020 Oct. PMID 32968282, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_177952.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC174800
      Related
      ENSMUST00000130033.9

    2. NR_177953.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC174800

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      13936698..13981665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_022311.3: Suppressed sequence

      Description
      NM_022311.3: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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