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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001285463.1 → NP_001272392.1 calcium-responsive transcription factor isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has multiple differences compared to variant 1. These differences result in a distinct 5' UTR and cause translation initiation at an alternate start codon compared to variant 1. The encoded protein (isoform 2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC116581, AC138597, AK044738, BF456537
- Conserved Domains (1) summary
-
- pfam15299
Location:108 → 338
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001285473.1 → NP_001272402.1 calcium-responsive transcription factor isoform 3
See identical proteins and their annotated locations for NP_001272402.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has a shorter 5' UTR and uses an alternate in-frame splice site in the 5' coding region compared to variant 1. The encoded protein (isoform 3) is shorter than isoform 1.
- Source sequence(s)
-
AC138597, AF454947, BF456537, EU170502
- Consensus CDS
-
CCDS78592.1
- UniProtKB/TrEMBL
-
A8VI08
- Related
- ENSMUSP00000027171.6, ENSMUST00000027171.12
- Conserved Domains (1) summary
-
- pfam15299
Location:192 → 419
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_139150.5 → NP_631889.1 calcium-responsive transcription factor isoform 1
See identical proteins and their annotated locations for NP_631889.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC138597, AF454947, AK044738, BF456537
- Consensus CDS
-
CCDS14989.1
- UniProtKB/Swiss-Prot
- B2RRZ9, Q8VHI4
- Related
- ENSMUSP00000141169.2, ENSMUST00000187978.7
- Conserved Domains (1) summary
-
- pfam15299
Location:227 → 454
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
RNA
-
NR_104344.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has multiple differences compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC138597, AF454947, BF456537, EU170503