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    Dnaaf9 dynein axonemal assembly factor 9 [ Mus musculus (house mouse) ]

    Gene ID: 228602, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Dnaaf9provided by MGI
    Official Full Name
    dynein axonemal assembly factor 9provided by MGI
    Primary source
    MGI:MGI:1923029
    See related
    Ensembl:ENSMUSG00000027309 AllianceGenome:MGI:1923029
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810487F15Rik; 4930402H24Rik
    Summary
    Orthologous to human DNAAF9 (dynein axonemal assembly factor 9). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 18.0), whole brain E14.5 (RPKM 16.2) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    2 F1; 2 63.25 cM
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (130548120..130682565, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (130706200..130840645, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05692 Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) Neighboring gene solute carrier family 4, sodium bicarbonate transporter-like, member 11 Neighboring gene STARR-seq mESC enhancer starr_05693 Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene Neighboring gene Ppp1r14c pseudogene Neighboring gene RIKEN cDNA A730017L22 gene Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 pseudogene Neighboring gene attractin Neighboring gene STARR-seq mESC enhancer starr_05698 Neighboring gene high mobility group box 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (4) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    dynein axonemal assembly factor 9
    Names
    uncharacterized protein C20orf194 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311147.1 → NP_001298076.1  dynein axonemal assembly factor 9 isoform 2

      See identical proteins and their annotated locations for NP_001298076.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR that results in the use of a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AK133294, AL772162
      Consensus CDS
      CCDS79848.1
      UniProtKB/TrEMBL
      Q3V0A7
      Related
      ENSMUSP00000113481.2, ENSMUST00000119422.8

    2. NM_029432.2 → NP_083708.1  dynein axonemal assembly factor 9 isoform 1

      See identical proteins and their annotated locations for NP_083708.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK045996, AL772162, BC052447
      Consensus CDS
      CCDS16750.1
      UniProtKB/Swiss-Prot
      Q3UPD4, Q7TT23
      Related
      ENSMUSP00000046992.9, ENSMUST00000044766.15

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      130548120..130682565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239474.3 → XP_011237776.1  dynein axonemal assembly factor 9 isoform X2

      See identical proteins and their annotated locations for XP_011237776.1

      UniProtKB/TrEMBL
      Q3V0A7

    2. XM_011239473.3 → XP_011237775.1  dynein axonemal assembly factor 9 isoform X1

    3. XM_017317759.3 → XP_017173248.1  dynein axonemal assembly factor 9 isoform X3

    4. XM_036161354.1 → XP_036017247.1  dynein axonemal assembly factor 9 isoform X3

    5. XM_036161356.1 → XP_036017249.1  dynein axonemal assembly factor 9 isoform X3

    RNA

    1. XR_001782167.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_028367.1: Suppressed sequence

      Description
      NM_028367.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TT23.2 GenPept UniProtKB/Swiss-Prot:Q7TT23

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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