U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ets2 E26 avian leukemia oncogene 2, 3' domain [ Mus musculus (house mouse) ]

    Gene ID: 23872, updated on 21-Apr-2024

    Summary

    Official Symbol
    Ets2provided by MGI
    Official Full Name
    E26 avian leukemia oncogene 2, 3' domainprovided by MGI
    Primary source
    MGI:MGI:95456
    See related
    Ensembl:ENSMUSG00000022895 AllianceGenome:MGI:95456
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ets-2
    Summary
    Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within ectodermal cell fate commitment; mesoderm development; and primitive streak formation. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; embryo mesenchyme; genitourinary system; sensory organ; and skeleton. Orthologous to human ETS2 (ETS proto-oncogene 2, transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in thymus adult (RPKM 84.5), lung adult (RPKM 48.0) and 27 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    16 C4; 16 56.64 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (95503274..95522093)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (95702407..95721049)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31901 Neighboring gene predicted gene, 31989 Neighboring gene STARR-positive B cell enhancer mm9_chr16:95950428-95950729 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:95971936-95972137 Neighboring gene STARR-seq mESC enhancer starr_41603 Neighboring gene STARR-seq mESC enhancer starr_41604 Neighboring gene predicted gene 6599 Neighboring gene STARR-seq mESC enhancer starr_41606 Neighboring gene predicted gene, 32130 Neighboring gene predicted gene, 41509

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011809.3NP_035939.3  protein C-ets-2

      See identical proteins and their annotated locations for NP_035939.3

      Status: VALIDATED

      Source sequence(s)
      AK038348, BE134375, BY140250
      Consensus CDS
      CCDS37412.1
      UniProtKB/Swiss-Prot
      P15037
      UniProtKB/TrEMBL
      Q3UAL8, Q3UMD7, Q3UP99, Q99K36
      Related
      ENSMUSP00000023612.9, ENSMUST00000023612.17
      Conserved Domains (2) summary
      cd08543
      Location:85173
      SAM_PNT-ETS-2; Sterile alpha motif (SAM)/Pointed domain of ETS-2
      smart00413
      Location:361445
      ETS; erythroblast transformation specific domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      95503274..95522093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)