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    Ankdd1b ankyrin repeat and death domain containing 1B [ Mus musculus (house mouse) ]

    Gene ID: 271144, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ankdd1bprovided by MGI
    Official Full Name
    ankyrin repeat and death domain containing 1Bprovided by MGI
    Primary source
    MGI:MGI:2444730
    See related
    Ensembl:ENSMUSG00000047117 AllianceGenome:MGI:2444730
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9330128J19Rik
    Summary
    Predicted to be involved in signal transduction. Orthologous to human ANKDD1B (ankyrin repeat and death domain containing 1B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in stomach adult (RPKM 1.5), cerebellum adult (RPKM 1.4) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    13 D1; 13 50.56 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (96552642..96607766, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (96416134..96471258, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene synaptic vesicle glycoprotein 2c Neighboring gene STARR-seq mESC enhancer starr_35337 Neighboring gene predicted gene 29543 Neighboring gene STARR-seq mESC enhancer starr_35340 Neighboring gene STARR-seq mESC enhancer starr_35341 Neighboring gene STARR-seq mESC enhancer starr_35342 Neighboring gene STARR-seq mESC enhancer starr_35344 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:97157941-97158317 Neighboring gene SNF8, ESCRT-II complex subunit, homolog pseudogene Neighboring gene POC5 centriolar protein Neighboring gene STARR-positive B cell enhancer ABC_E1884 Neighboring gene STARR-positive B cell enhancer ABC_E2418 Neighboring gene polymerase (DNA directed), kappa Neighboring gene ceramide transporter 1 Neighboring gene predicted gene, 46436

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat and death domain-containing protein 1B
    Names
    ankyrin repeat and death domain-containing protein ENSP00000345065 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042714.1 → NP_001036179.1  ankyrin repeat and death domain-containing protein 1B isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK033386, BC112417
      UniProtKB/Swiss-Prot
      Q14DN9, Q8BZP7
      Conserved Domains (4) summary
      cd00204
      Location:32 → 159
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:110 → 202
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:71 → 126
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:105 → 136
      ANK; ANK repeat [structural motif]

    2. NM_001369169.1 → NP_001356098.1  ankyrin repeat and death domain-containing protein 1B isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC125534
      Consensus CDS
      CCDS88501.1
      UniProtKB/Swiss-Prot
      Q14DN9, Q8BZP7
      Related
      ENSMUSP00000061643.6, ENSMUST00000055607.13
      Conserved Domains (3) summary
      PHA02876
      Location:63 → 413
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:194 → 225
      ANK; ANK repeat [structural motif]
      cl14633
      Location:466 → 540
      DD; Death Domain Superfamily of protein-protein interaction domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      96552642..96607766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158064.1 → XP_036013957.1  ankyrin repeat and death domain-containing protein 1B isoform X4

      Conserved Domains (2) summary
      PHA02876
      Location:63 → 413
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:194 → 225
      ANK; ANK repeat [structural motif]

    2. XM_006517683.3 → XP_006517746.1  ankyrin repeat and death domain-containing protein 1B isoform X2

      UniProtKB/Swiss-Prot
      Q14DN9, Q8BZP7
      Conserved Domains (4) summary
      sd00045
      Location:194 → 225
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:265 → 357
      Ank_2; Ankyrin repeats (3 copies)
      cl14633
      Location:433 → 475
      DD; Death Domain Superfamily of protein-protein interaction domains
      cl39094
      Location:68 → 289
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_006517681.3 → XP_006517744.1  ankyrin repeat and death domain-containing protein 1B isoform X1

      UniProtKB/Swiss-Prot
      Q14DN9, Q8BZP7
      Conserved Domains (3) summary
      PHA02876
      Location:63 → 413
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:194 → 225
      ANK; ANK repeat [structural motif]
      cl14633
      Location:466 → 508
      DD; Death Domain Superfamily of protein-protein interaction domains

    4. XM_006517685.3 → XP_006517748.1  ankyrin repeat and death domain-containing protein 1B isoform X5

      Conserved Domains (3) summary
      PHA02876
      Location:4 → 291
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:72 → 103
      ANK; ANK repeat [structural motif]
      cl14633
      Location:344 → 386
      DD; Death Domain Superfamily of protein-protein interaction domains

    5. XM_006517684.3 → XP_006517747.1  ankyrin repeat and death domain-containing protein 1B isoform X3

      Conserved Domains (3) summary
      PHA02876
      Location:13 → 324
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:105 → 136
      ANK; ANK repeat [structural motif]
      cl14633
      Location:377 → 419
      DD; Death Domain Superfamily of protein-protein interaction domains

    RNA

    1. XR_873766.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q14DN9.3 GenPept UniProtKB/Swiss-Prot:Q14DN9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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