tcp1.S t-complex 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tcp1.S
Official Full Name: t-complex 1 S homeolog
Primary source: Xenbase:XB-GENE-939846
Locus tag: XELAEV_18028947mg
See related: EnsemblRapid:ENSXLAG00005006145
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ccta; tcp1; tcp1a; tcp1-a; cct-alpha; tcp1alpha
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Genomic context

Location:: chromosome: 5S

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (35401263..35415324)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (35269340..35283413)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that the pfnd6a expression pattern overlaps with that of tcp1alpha indicating a spatio-temporal transcriptional coregulation in the majority of their expression sites suggestive of a possible involvement in the same developmental events.
Title: Comparative expression analysis of pfdn6a and tcp1α during Xenopus development.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables ATP-dependent protein folding chaperone	IEA Inferred from Electronic Annotation more info
enables unfolded protein binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein folding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of chaperonin-containing T-complex	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: t-complex 1 S homeolog

Names: t-complex polypeptide 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087509.1 → NP_001080978.1 t-complex 1 S homeolog

See identical proteins and their annotated locations for NP_001080978.1

Status: PROVISIONAL

Source sequence(s)

BC068901

UniProtKB/TrEMBL

A0A974CSF7, Q6NTQ5

Related

ENSXLAP00005018415.1, ENSXLAT00005018725.1

Conserved Domains (2) summary

cd03335
Location:9 → 535

TCP1_alpha; TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...

TIGR02340
Location:5 → 540

chap_CCT_alpha; T-complex protein 1, alpha subunit