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    AT5G62570 Calmodulin binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836377, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G62570
    Gene description
    Calmodulin binding protein-like protein
    Primary source
    Araport:AT5G62570
    Locus tag
    AT5G62570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    calmodulin-binding protein 60a; CBP60a; K19B1.18; K19B1_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (25113948..25117314)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme 3 Neighboring gene microtubule-associated futsch-like protein Neighboring gene RING/U-box superfamily protein with ARM repeat domain-containing protein Neighboring gene uncharacterized protein Neighboring gene succinate dehydrogenase subunit Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity. Truman W, et al. Plant Physiol, 2013 Dec. PMID 24134885, Free PMC Article
    2. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203668.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calmodulin binding protein-like protein
    NP_001190597.1
    • Calmodulin binding protein-like; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2).
    NP_001318865.1
    • Calmodulin binding protein-like; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 287 Blast hits to 280 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25113948..25117314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345551.1 → NP_001331113.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPN9, A0A178UQ36, A0A1P8BCW0, A0A384L701

    2. NM_001345550.1 → NP_001318865.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URA5, A0A2H1ZEA0, A0A384L8C7
      Conserved Domains (1) summary
      pfam07887
      Location:86 → 376
      Calmodulin_bind; Calmodulin binding protein-like

    3. NM_001345552.1 → NP_001331112.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCW4

    4. NM_001203668.2 → NP_001190597.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190597.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SVV6, F4K6J3, Q8RWH0, Q9FJI9
      Conserved Domains (1) summary
      pfam07887
      Location:71 → 361
      Calmodulin_bind; Calmodulin binding protein-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0SVV6.1

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