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    LOC4323896 ABC transporter B family member 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323896, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4323896
    Gene description
    ABC transporter B family member 11
    Locus tag
    OSNPB_010695800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    mdr7
    Expression
    Biased expression in roots after flowering (RPKM 72.5), leaves after flowering (RPKM 56.3) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28786412..28793409, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene putative D-cysteine desulfhydrase 2, mitochondrial Neighboring gene ABC transporter B family member 4 Neighboring gene transcription repressor MYB5 Neighboring gene uncharacterized LOC9272654 Neighboring gene two-pore potassium channel 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter B family member 11; ABC transporter B family member 5
    Names
    MDR-like ABC transporter
    Os01g0695800
    P-glycoprotein-like
    P0431H09.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28786412..28793409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020250.1 → XP_025876035.1  ABC transporter B family member 5 isoform X1

      UniProtKB/TrEMBL
      Q8GU72
      Conserved Domains (1) summary
      cl28181
      Location:29 → 1287
      AAA; ATPases associated with a variety of cellular activities

    2. XM_015766599.2 → XP_015622085.1  ABC transporter B family member 11 isoform X2

      UniProtKB/TrEMBL
      B8A818, B9EYZ4, Q8GU72
      Conserved Domains (1) summary
      PTZ00265
      Location:29 → 1256
      PTZ00265; multidrug resistance protein (mdr1); Provisional
    Nucleotide Protein
    Heading Accession and Version

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