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    LOC4329001 galactoside 2-alpha-L-fucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329001, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4329001
    Gene description
    galactoside 2-alpha-L-fucosyltransferase
    Locus tag
    OSNPB_020275200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 25.2), roots after flowering (RPKM 18.1) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10088210..10095301, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable plastidic glucose transporter 2 Neighboring gene cytochrome c-type biogenesis CcmH-like mitochondrial protein Neighboring gene uncharacterized LOC9267083 Neighboring gene galactoside 2-alpha-L-fucosyltransferase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactoside 2-alpha-L-fucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactoside 2-alpha-L-fucosyltransferase
    Names
    Os02g0275200
    P0017G06.12
    P0413A11.42
    putative galactoside 2-alpha-L-fucosyltransferase
    XP_015625326.1
    XP_015625327.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416508.1 → NP_001403437.1  galactoside 2-alpha-L-fucosyltransferase

      Status: VALIDATED

      Source sequence(s)
      AK071664, AP014958, CI019129
      UniProtKB/TrEMBL
      A0A0P0VHL1, Q6K7S6, Q6K7W2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      10088210..10095301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769840.2 → XP_015625326.1  galactoside 2-alpha-L-fucosyltransferase isoform X1

      UniProtKB/TrEMBL
      Q6K7S6
      Conserved Domains (1) summary
      cl16914
      Location:112 → 564
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

    2. XM_015769841.2 → XP_015625327.1  galactoside 2-alpha-L-fucosyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A0N7KF32
      Conserved Domains (1) summary
      cl16914
      Location:33 → 485
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
    Nucleotide Protein
    Heading Accession and Version

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