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    LOC4336205 elongator complex protein 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336205, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4336205
    Gene description
    elongator complex protein 3-like
    Locus tag
    OSNPB_040484900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ELP3; OJ000223_09.4
    Expression
    Ubiquitous expression in mature seeds (RPKM 55.5), flower buds (RPKM 23.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24237144..24240758, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2 Neighboring gene anaphase-promoting complex subunit 2 Neighboring gene 26S proteasome non-ATPase regulatory subunit 6-like Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of elongator holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongator complex protein 3
    Names
    Elongator component 3
    LOC_Os04g40840
    OSJNBa0081L15.14
    tRNA uridine(34) acetyltransferase
    XP_015635801.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419591.1 → NP_001406520.1  elongator complex protein 3

      Status: VALIDATED

      Source sequence(s)
      AK122179, AP014960, CB663106, CI110280, CI303921, CI596573
      UniProtKB/Swiss-Prot
      Q0JC95, Q7X7L3
      UniProtKB/TrEMBL
      A0A7I6P9U9, A2XUT6, Q01IF8

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24237144..24240758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780315.2 → XP_015635801.1  elongator complex protein 3

      UniProtKB/Swiss-Prot
      Q7X7L3
      Conserved Domains (1) summary
      TIGR01211
      Location:63 → 572
      ELP3; radical SAM enzyme/protein acetyltransferase, ELP3 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X7L3.2 GenPept UniProtKB/Swiss-Prot:Q7X7L3

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