LOC4337860 dnaJ protein ERDJ3B-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337860
Gene description: dnaJ protein ERDJ3B-like
Locus tag: OSNPB_050156500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: DJB6; ERDJ3B; OsDjB6; OsERdj3B; OsJ_17183; P0676G05.5
Expression: Broad expression in roots after flowering (RPKM 164.0), leaves after flowering (RPKM 138.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (3303211..3307695)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables unfolded protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein folding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: dnaJ protein ERDJ3B

Names: Chaperone protein dnaJ B6; Endoplasmic reticulum dnaJ domain-containing protein 3B; LOC_Os05g06440; P0431G05.15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420213.1 → NP_001407142.1 dnaJ protein ERDJ3B precursor

Status: VALIDATED

Source sequence(s)

AK287577, AU184465, AU184466, CI436294, CI765150, EE592227

UniProtKB/Swiss-Prot

B9FHF3, Q0DKL2, Q5WMX3, Q75M07

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029260.1 Reference IRGSP-1.0 Primary Assembly

Range

3303211..3307695

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015784370.2 → XP_015639856.1 dnaJ protein ERDJ3B

UniProtKB/Swiss-Prot

B9FHF3

Conserved Domains (1) summary

COG0484
Location:21 → 347

DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]