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    LOC4331915 probable protein phosphatase 2C BIPP2C1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331915, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4331915
    Gene description
    probable protein phosphatase 2C BIPP2C1
    Locus tag
    OSNPB_030192500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BIPP2C1; OsBIPP2C1; OsJ_09738
    Expression
    Broad expression in flowers (RPKM 53.9), flower buds (RPKM 39.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4815469..4820357)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein UPSTREAM OF FLC Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B Neighboring gene non-specific lipid-transfer protein-like protein At2g13820 Neighboring gene inositol-3-phosphate synthase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable protein phosphatase 2C BIPP2C1
    Names
    BTH-induced protein phosphatase 2C 1
    LOC_Os03g09220
    XP_015631689.1
    XP_015631690.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417304.1 → NP_001404233.1  probable protein phosphatase 2C BIPP2C1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB650429, CB653987, CB655792, CB670994, CI088713, CI585624
      UniProtKB/Swiss-Prot
      B9F5M5, Q10QL1, Q10QL2, Q10QL3, Q10QL4, Q10QL5

    2. NM_001417305.1 → NP_001404234.1  probable protein phosphatase 2C BIPP2C1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB643822, CB653987, CB655792, CB670994, CI088713, CI585624

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4815469..4820357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776203.1 → XP_015631689.1  probable protein phosphatase 2C BIPP2C1 isoform X1

      UniProtKB/Swiss-Prot
      Q10QL5
      Conserved Domains (1) summary
      cl00120
      Location:342 → 528
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    2. XM_015776204.1 → XP_015631690.1  probable protein phosphatase 2C BIPP2C1 isoform X2

      UniProtKB/Swiss-Prot
      Q10QL5
      Conserved Domains (1) summary
      cl00120
      Location:340 → 526
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10QL5.1 GenPept UniProtKB/Swiss-Prot:Q10QL5

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