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    LOC4340665 probable peroxygenase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340665, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340665
    Gene description
    probable peroxygenase 4
    Locus tag
    OSNPB_060254700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 422.4), flower buds (RPKM 83.0) and 3 other tissues See more
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    Genomic context

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    See LOC4340665 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8011876..8014848, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281251 Neighboring gene probable peroxygenase 5 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 4 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable peroxygenase 4
    Names
    Os06g0254700
    P0046H10.42
    P0592E11.12
    putative calcium binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      8011876..8014848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785602.1 → XP_015641088.1  probable peroxygenase 4

      UniProtKB/TrEMBL
      A0A0P0WVC1, B8B0A5, Q652U4
      Conserved Domains (1) summary
      pfam05042
      Location:36 → 206
      Caleosin; Caleosin related protein
    Nucleotide Protein
    Heading Accession and Version

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