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    LOC4342543 probable ribose-5-phosphate isomerase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342543, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4342543
    Gene description
    probable ribose-5-phosphate isomerase 3, chloroplastic
    Locus tag
    OSNPB_070176900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 107.0), roots after flowering (RPKM 72.2) and 5 other tissues See more
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    Genomic context

    See LOC4342543 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4068002..4070232, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat extensin-like protein 6 Neighboring gene serine/threonine-protein kinase Nek3-like Neighboring gene uncharacterized LOC9266277 Neighboring gene MMS19 nucleotide excision repair protein homolog Neighboring gene protein LIFEGUARD 2

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    probable ribose-5-phosphate isomerase 3, chloroplastic
    Names
    Os07g0176900
    P0534H07.29-1
    P0534H07.29-2
    putative ribose-5-phosphate isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4068002..4070232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792509.2XP_015647995.1  probable ribose-5-phosphate isomerase 3, chloroplastic

      UniProtKB/TrEMBL
      A3BH42, B8B7P6, Q0D886, Q6ZEZ1, Q6ZEZ2
      Conserved Domains (1) summary
      cl00339
      Location:47280
      SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...