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    LOC4339675 CTP synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339675, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339675
    Gene description
    CTP synthase
    Locus tag
    OSNPB_050573300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 72.5), roots after flowering (RPKM 53.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28551310..28557317, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g39680 Neighboring gene uncharacterized LOC4339673 Neighboring gene isocitrate dehydrogenase [NADP] Neighboring gene nuclear transcription factor Y subunit B-4-like Neighboring gene uncharacterized LOC107277099

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CTP synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyrimidine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CTP synthase
    Names
    Os05g0573300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28551310..28557317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784733.2 → XP_015640219.1  CTP synthase

      UniProtKB/TrEMBL
      A0A0P0WQR1, B8AWV2, B9FLQ5, Q65XK2
      Conserved Domains (1) summary
      PLN02327
      Location:1 → 560
      PLN02327; CTP synthase
    Nucleotide Protein
    Heading Accession and Version

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