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    LOC4346972 annexin D5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346972, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4346972
    Gene description
    annexin D5
    Locus tag
    OSNPB_090394900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 161.0), flowers (RPKM 114.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13706493..13711511)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene type IV inositol polyphosphate 5-phosphatase 9 Neighboring gene monoacylglycerol lipase Neighboring gene uncharacterized LOC107275912 Neighboring gene probable transcription factor RL9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    annexin D5
    Names
    B1040D06.12
    B1339H09.19
    Os09g0394900
    putative annexin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13706493..13711511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757035.1 → XP_015612521.1  annexin D5

      UniProtKB/TrEMBL
      A0A0P0XLU1, B8BF46, Q0J1Y0, Q6H450
      Conserved Domains (1) summary
      pfam00191
      Location:170 → 236
      Annexin
    Nucleotide Protein
    Heading Accession and Version

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