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    LOC4350355 exosome complex component RRP43 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350355, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC4350355
    Gene description
    exosome complex component RRP43
    Locus tag
    OSNPB_110311300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 14.7), flowers (RPKM 12.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (11980461..11987976)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 Neighboring gene uncharacterized LOC4350354 Neighboring gene dolichol-phosphate mannose synthase subunit 2 Neighboring gene uncharacterized LOC9271704

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in TRAMP-dependent tRNA surveillance pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U1 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U5 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component RRP43
    Names
    Os11g0311300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11980461..11987976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759909.2 → XP_015615395.1  exosome complex component RRP43

      UniProtKB/TrEMBL
      A0A0P0Y1Q0, A0A8J8XTE4, B7ELW5, B8BK82, B9GAH1, Q0IT44
      Conserved Domains (1) summary
      cd11369
      Location:23 → 293
      RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
    Nucleotide Protein
    Heading Accession and Version

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