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    LOC101928047 uncharacterized LOC101928047 [ Homo sapiens (human) ]

    Gene ID: 101928047, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101928047
    Gene description
    uncharacterized LOC101928047
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 4.2), bone marrow (RPKM 1.1) and 3 other tissues See more
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    Genomic context

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    Location:
    6p25.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (6709377..6733391)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (6578609..6599494)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene LY86 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23921 Neighboring gene calponin 3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23924 Neighboring gene lymphocyte antigen 86 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23925 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:6654090-6654280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6674525-6675024 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:6694456-6695405 Neighboring gene uncharacterized LOC101928004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6712197-6712986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23927 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6725016-6725709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6750245-6750862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6751483-6752100 Neighboring gene uncharacterized LOC105374901 Neighboring gene uncharacterized LOC124901254

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      6709377..6733391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001743949.2 RNA Sequence

    2. XR_002956321.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      6578609..6599494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076488.1 RNA Sequence

    2. XR_007076487.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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