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    Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315646, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Fdxacb1provided by RGD
    Official Full Name
    ferredoxin-fold anticodon binding domain containing 1provided by RGD
    Primary source
    RGD:1562252
    See related
    Ensembl:ENSRNOG00000010743 AllianceGenome:RGD:1562252
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562252
    Summary
    Predicted to enable rRNA (uridine-N3-)-methyltransferase activity. Predicted to be involved in rRNA base methylation. Predicted to be active in cytoplasm. Orthologous to human FDXACB1 (ferredoxin-fold anticodon binding domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 45.2), Kidney (RPKM 45.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    8q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (60009818..60014625)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (51111831..51118253)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (55196758..55201610)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosomal binding domain 2, pseudogene 2 Neighboring gene cilia and flagella associated protein 68 Neighboring gene ALG9, alpha-1,2-mannosyltransferase Neighboring gene uncharacterized LOC134480165 Neighboring gene 60S ribosomal protein L27a-like Neighboring gene protein phosphatase 2 scaffold subunit A beta Neighboring gene salt-inducible kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables rRNA (uridine-N3-)-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA base methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ferredoxin-fold anticodon-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108145.2 → NP_001101615.2  ferredoxin-fold anticodon-binding domain-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      Related
      ENSRNOP00000062770.1, ENSRNOT00000065879.2

    2. NM_001401039.1 → NP_001387968.1  ferredoxin-fold anticodon-binding domain-containing protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A8I6A0N8
      Related
      ENSRNOP00000085670.1, ENSRNOT00000115309.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      60009818..60014625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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