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    Pacrgl parkin coregulated like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360947, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Pacrglprovided by RGD
    Official Full Name
    parkin coregulated likeprovided by RGD
    Primary source
    RGD:1311045
    See related
    Ensembl:ENSRNOG00000004140 AllianceGenome:RGD:1311045
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311045
    Summary
    Orthologous to human PACRGL (parkin coregulated like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 37.1), Brain (RPKM 19.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    14q11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (66744625..66769593, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (62532019..62556977, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (66749801..66771762, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel interacting protein 4 Neighboring gene dyskerin pseudouridine synthase 1, pseudogene 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1, pseudogene 20 Neighboring gene slit guidance ligand 2 Neighboring gene microRNA 218-1 Neighboring gene microRNA 3565 Neighboring gene ribosomal protein S3a, pseudogene 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    PACRG-like protein
    Names
    PARK2 co-regulated-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398926.1 → NP_001385855.1  PACRG-like protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A6IJK1, D3ZE96
      Related
      ENSRNOP00000005587.3, ENSRNOT00000005587.5
      Conserved Domains (1) summary
      pfam10274
      Location:77 → 244
      ParcG; Parkin co-regulated protein

    RNA

    1. NR_174142.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014

    2. NR_174143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014

    3. NR_174144.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      66744625..66769593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017599557.3 → XP_017455046.1  PACRG-like protein isoform X1

      UniProtKB/TrEMBL
      A6IJK1, D3ZE96
      Conserved Domains (1) summary
      pfam10274
      Location:77 → 244
      ParcG; Parkin co-regulated protein

    2. XM_006251057.5 → XP_006251119.1  PACRG-like protein isoform X1

      See identical proteins and their annotated locations for XP_006251119.1

      UniProtKB/TrEMBL
      A6IJK1, D3ZE96
      Conserved Domains (1) summary
      pfam10274
      Location:77 → 244
      ParcG; Parkin co-regulated protein

    3. XM_017599558.2 → XP_017455047.1  PACRG-like protein isoform X1

      UniProtKB/TrEMBL
      A6IJK1, D3ZE96
      Conserved Domains (1) summary
      pfam10274
      Location:77 → 244
      ParcG; Parkin co-regulated protein
    Nucleotide Protein Strain
    Heading Accession and Version

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