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    Glod5 glyoxalase domain containing 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302554, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Glod5provided by RGD
    Official Full Name
    glyoxalase domain containing 5provided by RGD
    Primary source
    RGD:1564596
    See related
    Ensembl:ENSRNOG00000039571 AllianceGenome:RGD:1564596
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564596
    Summary
    Orthologous to human GLOD5 (glyoxalase domain containing 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 292.3), Spleen (RPKM 23.3) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    Xq12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (17145936..17160733)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (14473994..14488797)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (15225645..15240458)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene WASP actin nucleation promoting factor Neighboring gene SUV39H1 histone lysine methyltransferase Neighboring gene Annexin A7, pseudogene 3 Neighboring gene uncharacterized LOC102554502 Neighboring gene GATA binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    glyoxalase domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106957.1 → NP_001100427.1  glyoxalase domain-containing protein 5

      See identical proteins and their annotated locations for NP_001100427.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474078
      UniProtKB/TrEMBL
      A6KP59, D3Z9B0
      Related
      ENSRNOP00000008648.4, ENSRNOT00000008648.6
      Conserved Domains (1) summary
      cd07253
      Location:23 → 145
      Glo_EDI_BRP_like_2; This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      17145936..17160733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099630.2 → XP_038955558.1  glyoxalase domain-containing protein 5 isoform X1

      Conserved Domains (1) summary
      cd07253
      Location:22 → 144
      GLOD5; Human glyoxalase domain-containing protein 5 and similar proteins

    2. XM_006256706.4 → XP_006256768.2  glyoxalase domain-containing protein 5 isoform X2

      Conserved Domains (1) summary
      cd07253
      Location:38 → 127
      GLOD5; Human glyoxalase domain-containing protein 5 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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