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    SDC1 syndecan 1 [ Gallus gallus (chicken) ]

    Gene ID: 421960, updated on 5-Mar-2024

    Summary

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    Symbol
    SDC1provided by CGNC
    Full Name
    syndecan 1provided by CGNC
    Primary source
    CGNC:12340
    See related
    Ensembl:ENSGALG00010007999
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (101308344..101330224, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (101139163..101161071, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053165 Neighboring gene uncharacterized LOC121110268 Neighboring gene pumilio RNA binding family member 2 Neighboring gene B(0,+)-type amino acid transporter 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syndecan-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      101308344..101330224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_419972.7 → XP_419972.2  syndecan-1

      UniProtKB/TrEMBL
      F1NV24
      Related
      ENSGALP00010010615.1, ENSGALT00010019066.1
      Conserved Domains (1) summary
      pfam01034
      Location:244 → 306
      Syndecan; Syndecan domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      101139163..101161071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040667377.2 → XP_040523311.1  syndecan-1

      Conserved Domains (1) summary
      smart00294
      Location:274 → 292
      4.1m; putative band 4.1 homologues' binding motif
    Nucleotide Protein
    Heading Accession and Version

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