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    NAIF1 nuclear apoptosis inducing factor 1 [ Gallus gallus (chicken) ]

    Gene ID: 417229, updated on 3-Apr-2024

    Summary

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    Official Symbol
    NAIF1provided by CGNC
    Official Full Name
    nuclear apoptosis inducing factor 1provided by CGNC
    Primary source
    CGNC:3796
    See related
    Ensembl:ENSGALG00010028061
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C9orf90
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 17
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (5496084..5500450)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (4909732..4914098)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene alpha-1-acid glycoprotein 1-like Neighboring gene orosomucoid 1 (ovoglycoprotein) Neighboring gene solute carrier family 25 member 25 Neighboring gene family with sequence similarity 102 member A Neighboring gene dolichyl-phosphate mannosyltransferase subunit 2, regulatory

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the novel human gene, nuclear apoptosis-inducing factor 1, induces apoptosis. Lv B, et al. Int J Biochem Cell Biol, 2006. PMID 16378748
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear apoptosis-inducing factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030692.3 → NP_001025863.2  nuclear apoptosis-inducing factor 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AET7
      Conserved Domains (2) summary
      COG3264
      Location:188 → 313
      MscK; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
      pfam13873
      Location:12 → 89
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5496084..5500450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025156077.3 → XP_025011845.1  nuclear apoptosis-inducing factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AET7
      Conserved Domains (2) summary
      COG3264
      Location:188 → 313
      MscK; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
      pfam13873
      Location:12 → 89
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    2. XM_015279495.4 → XP_015134981.1  nuclear apoptosis-inducing factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AET7
      Conserved Domains (2) summary
      COG3264
      Location:188 → 313
      MscK; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
      pfam13873
      Location:12 → 89
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RNA

    1. XR_003078046.3 RNA Sequence

      Related
      ENSGALT00010067995.1

    2. XR_006931667.1 RNA Sequence

    3. XR_006931666.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4909732..4914098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928989.1 → XP_046784945.1  nuclear apoptosis-inducing factor 1 isoform X1

      Conserved Domains (2) summary
      COG3264
      Location:188 → 313
      MscK; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
      pfam13873
      Location:12 → 89
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RNA

    1. XR_006936405.1 RNA Sequence

    2. XR_006936406.1 RNA Sequence

    3. XR_006936404.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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