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    Btbd17 BTB domain containing 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303660, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Btbd17provided by RGD
    Official Full Name
    BTB domain containing 17provided by RGD
    Primary source
    RGD:1563331
    See related
    Ensembl:ENSRNOG00000003109 AllianceGenome:RGD:1563331
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563331
    Summary
    Orthologous to human BTBD17 (BTB domain containing 17). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 31.1), Testes (RPKM 2.2) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    10q32.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (100325177..100331669, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (99826132..99832624, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (103334052..103341820, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene tweety family member 2 Neighboring gene small nucleolar RNA SNORA67 Neighboring gene dynein, axonemal, intermediate chain 2 Neighboring gene kinesin family member 19 Neighboring gene G protein-coupled receptor 142 Neighboring gene G protein-coupled receptor, class C, group 5, member C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 17
    Names
    BTB (POZ) domain containing 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134534.1 → NP_001128006.1  BTB/POZ domain-containing protein 17 precursor

      See identical proteins and their annotated locations for NP_001128006.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HKJ0, A6HKJ1, D4A8L9
      Related
      ENSRNOP00000004191.2, ENSRNOT00000004191.4
      Conserved Domains (3) summary
      smart00225
      Location:93 → 191
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:198 → 296
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:92 → 187
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      100325177..100331669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006247692.4 → XP_006247754.1  BTB/POZ domain-containing protein 17 isoform X2

      See identical proteins and their annotated locations for XP_006247754.1

      UniProtKB/TrEMBL
      A6HKJ1
      Conserved Domains (2) summary
      cd18493
      Location:166 → 238
      BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
      cl38908
      Location:60 → 158
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. XM_039086186.1 → XP_038942114.1  BTB/POZ domain-containing protein 17 isoform X1

      UniProtKB/TrEMBL
      A6HKJ1
      Conserved Domains (2) summary
      cd18493
      Location:185 → 257
      BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
      cl38908
      Location:79 → 177
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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