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    Vsig10 V-set and immunoglobulin domain containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304529, updated on 30-Mar-2024

    Summary

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    Official Symbol
    Vsig10provided by RGD
    Official Full Name
    V-set and immunoglobulin domain containing 10provided by RGD
    Primary source
    RGD:1565800
    See related
    Ensembl:ENSRNOG00000022698 AllianceGenome:RGD:1565800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565800
    Summary
    Predicted to be integral component of membrane. Predicted to be active in neuron projection. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 56.9), Lung (RPKM 52.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    12q16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (44902172..44940112, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (39241332..39277302, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (44965343..44999214, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene replication factor C subunit 5 Neighboring gene WD repeat and SOCS box-containing 2 Neighboring gene uncharacterized LOC120095992 Neighboring gene phosphatidylethanolamine binding protein 1 Neighboring gene TAO kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271336.1 → NP_001258265.1  V-set and immunoglobulin domain-containing protein 10 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A0A0G2K994
      Conserved Domains (4) summary
      cd00096
      Location:351 → 426
      Ig; Immunoglobulin domain
      smart00410
      Location:347 → 429
      IG_like; Immunoglobulin like
      pfam13927
      Location:255 → 318
      Ig_3; Immunoglobulin domain
      cl11960
      Location:60 → 146
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      44902172..44940112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006249437.5 → XP_006249499.1  V-set and immunoglobulin domain-containing protein 10 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K994, D3ZBX7
      Related
      ENSRNOP00000029661.6
      Conserved Domains (4) summary
      cd00096
      Location:319 → 394
      Ig; Immunoglobulin domain
      smart00410
      Location:315 → 397
      IG_like; Immunoglobulin like
      pfam13927
      Location:223 → 286
      Ig_3; Immunoglobulin domain
      cl11960
      Location:28 → 114
      Ig; Immunoglobulin domain

    2. XM_063271346.1 → XP_063127416.1  V-set and immunoglobulin domain-containing protein 10 isoform X3

    3. XM_039089495.2 → XP_038945423.2  V-set and immunoglobulin domain-containing protein 10 isoform X4

    4. XM_063271345.1 → XP_063127415.1  V-set and immunoglobulin domain-containing protein 10 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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