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    PUM1 pumilio RNA binding family member 1 [ Gallus gallus (chicken) ]

    Gene ID: 419554, updated on 5-Mar-2024

    Summary

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    Symbol
    PUM1provided by CGNC
    Full Name
    pumilio RNA binding family member 1provided by CGNC
    Primary source
    CGNC:369
    See related
    Ensembl:ENSGALG00010013453
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PUM1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (835328..905251, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (601911..671806, complement)

    Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene lysosomal protein transmembrane 5 Neighboring gene microRNA 3531 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene syndecan 3 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene basic proline-rich protein-like Neighboring gene Na+/K+ transporting ATPase interacting 1 Neighboring gene small nuclear ribonucleoprotein U5 subunit 40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and gene expression profiling of the Pum1 and Pum2 members of the Pumilio family in the chicken. Lee JY, et al. Mol Reprod Dev, 2008 Jan. PMID 17474090
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 1
    Names
    pumilio 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012840.3 → NP_001012858.2  pumilio homolog 1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000339
      Related
      ENSGALP00010019164.1, ENSGALT00010032397.1
      Conserved Domains (1) summary
      cd07920
      Location:748 → 1071
      Pumilio; Pumilio-family RNA binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      835328..905251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015297541.4 → XP_015153027.1  pumilio homolog 1 isoform X21

      Conserved Domains (1) summary
      cd07920
      Location:723 → 1046
      Pumilio; Pumilio-family RNA binding domain

    2. XM_015297542.4 → XP_015153028.1  pumilio homolog 1 isoform X20

      Conserved Domains (1) summary
      cd07920
      Location:724 → 1047
      Pumilio; Pumilio-family RNA binding domain

    3. XM_040651700.2 → XP_040507634.1  pumilio homolog 1 isoform X25

      Conserved Domains (1) summary
      cd07920
      Location:746 → 1067
      Pumilio; Pumilio-family RNA binding domain

    4. XM_040651699.2 → XP_040507633.1  pumilio homolog 1 isoform X24

      Conserved Domains (1) summary
      cd07920
      Location:747 → 1068
      Pumilio; Pumilio-family RNA binding domain

    5. XM_025142979.3 → XP_024998747.1  pumilio homolog 1 isoform X19

      Conserved Domains (1) summary
      cd07920
      Location:747 → 1070
      Pumilio; Pumilio-family RNA binding domain

    6. XM_040651690.2 → XP_040507624.1  pumilio homolog 1 isoform X10

      Conserved Domains (1) summary
      cd07920
      Location:841 → 1164
      Pumilio; Pumilio-family RNA binding domain

    7. XM_040651691.2 → XP_040507625.1  pumilio homolog 1 isoform X11

      Conserved Domains (1) summary
      cd07920
      Location:842 → 1163
      Pumilio; Pumilio-family RNA binding domain

    8. XM_040651689.2 → XP_040507623.1  pumilio homolog 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V0YSJ2
      Related
      ENSGALP00010019159.1, ENSGALT00010032391.1
      Conserved Domains (1) summary
      cd07920
      Location:842 → 1165
      Pumilio; Pumilio-family RNA binding domain

    9. XM_040651697.2 → XP_040507631.1  pumilio homolog 1 isoform X18

      Conserved Domains (1) summary
      cd07920
      Location:842 → 1163
      Pumilio; Pumilio-family RNA binding domain

    10. XM_040651695.2 → XP_040507629.1  pumilio homolog 1 isoform X16

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1164
      Pumilio; Pumilio-family RNA binding domain

    11. XM_040651687.2 → XP_040507621.1  pumilio homolog 1 isoform X14

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1166
      Pumilio; Pumilio-family RNA binding domain

    12. XM_015297533.4 → XP_015153019.1  pumilio homolog 1 isoform X2

      Conserved Domains (1) summary
      cd07920
      Location:847 → 1170
      Pumilio; Pumilio-family RNA binding domain

    13. XM_040651696.2 → XP_040507630.1  pumilio homolog 1 isoform X17

      Conserved Domains (1) summary
      cd07920
      Location:842 → 1163
      Pumilio; Pumilio-family RNA binding domain

    14. XM_040651693.2 → XP_040507627.1  pumilio homolog 1 isoform X15

      Conserved Domains (1) summary
      cd07920
      Location:842 → 1165
      Pumilio; Pumilio-family RNA binding domain

    15. XM_040651692.2 → XP_040507626.1  pumilio homolog 1 isoform X23

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1121
      Pumilio; Pumilio-family RNA binding domain

    16. XM_015297538.4 → XP_015153024.1  pumilio homolog 1 isoform X9

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1164
      Pumilio; Pumilio-family RNA binding domain

    17. XM_015297537.4 → XP_015153023.1  pumilio homolog 1 isoform X6

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1166
      Pumilio; Pumilio-family RNA binding domain

    18. XM_040651686.2 → XP_040507620.1  pumilio homolog 1 isoform X13

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1166
      Pumilio; Pumilio-family RNA binding domain

    19. XM_040651698.2 → XP_040507632.1  pumilio homolog 1 isoform X22

      Conserved Domains (1) summary
      cd07920
      Location:844 → 1122
      Pumilio; Pumilio-family RNA binding domain

    20. XM_040651688.2 → XP_040507622.1  pumilio homolog 1 isoform X7

      Conserved Domains (1) summary
      cd07920
      Location:844 → 1165
      Pumilio; Pumilio-family RNA binding domain

    21. XM_015297535.4 → XP_015153021.1  pumilio homolog 1 isoform X5

      UniProtKB/Swiss-Prot
      Q2VB19, Q5F4A7
      Conserved Domains (1) summary
      cd07920
      Location:844 → 1167
      Pumilio; Pumilio-family RNA binding domain

    22. XM_015297532.4 → XP_015153018.1  pumilio homolog 1 isoform X3

      Conserved Domains (1) summary
      cd07920
      Location:847 → 1170
      Pumilio; Pumilio-family RNA binding domain

    23. XM_015297540.4 → XP_015153026.1  pumilio homolog 1 isoform X12

      Conserved Domains (1) summary
      cd07920
      Location:848 → 1126
      Pumilio; Pumilio-family RNA binding domain

    24. XM_015297534.4 → XP_015153020.1  pumilio homolog 1 isoform X4

      Conserved Domains (1) summary
      cd07920
      Location:848 → 1169
      Pumilio; Pumilio-family RNA binding domain

    25. XM_015297531.4 → XP_015153017.1  pumilio homolog 1 isoform X1

      Conserved Domains (1) summary
      cd07920
      Location:848 → 1171
      Pumilio; Pumilio-family RNA binding domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      601911..671806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046931941.1 → XP_046787897.1  pumilio homolog 1 isoform X21

    2. XM_046931940.1 → XP_046787896.1  pumilio homolog 1 isoform X20

    3. XM_046931945.1 → XP_046787901.1  pumilio homolog 1 isoform X25

    4. XM_046931944.1 → XP_046787900.1  pumilio homolog 1 isoform X24

    5. XM_046931939.1 → XP_046787895.1  pumilio homolog 1 isoform X19

    6. XM_046931930.1 → XP_046787886.1  pumilio homolog 1 isoform X10

    7. XM_046931931.1 → XP_046787887.1  pumilio homolog 1 isoform X11

    8. XM_046931928.1 → XP_046787884.1  pumilio homolog 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V0YSJ2

    9. XM_046931938.1 → XP_046787894.1  pumilio homolog 1 isoform X18

    10. XM_046931936.1 → XP_046787892.1  pumilio homolog 1 isoform X16

    11. XM_046931934.1 → XP_046787890.1  pumilio homolog 1 isoform X14

    12. XM_046931921.1 → XP_046787877.1  pumilio homolog 1 isoform X2

    13. XM_046931937.1 → XP_046787893.1  pumilio homolog 1 isoform X17

    14. XM_046931935.1 → XP_046787891.1  pumilio homolog 1 isoform X15

    15. XM_046931943.1 → XP_046787899.1  pumilio homolog 1 isoform X23

    16. XM_046931929.1 → XP_046787885.1  pumilio homolog 1 isoform X9

    17. XM_046931926.1 → XP_046787882.1  pumilio homolog 1 isoform X6

    18. XM_046931933.1 → XP_046787889.1  pumilio homolog 1 isoform X13

    19. XM_046931942.1 → XP_046787898.1  pumilio homolog 1 isoform X22

    20. XM_046931927.1 → XP_046787883.1  pumilio homolog 1 isoform X7

    21. XM_046931924.1 → XP_046787880.1  pumilio homolog 1 isoform X5

      UniProtKB/Swiss-Prot
      Q2VB19, Q5F4A7

    22. XM_046931922.1 → XP_046787878.1  pumilio homolog 1 isoform X3

    23. XM_046931932.1 → XP_046787888.1  pumilio homolog 1 isoform X12

    24. XM_046931923.1 → XP_046787879.1  pumilio homolog 1 isoform X4

    25. XM_046931920.1 → XP_046787876.1  pumilio homolog 1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2VB19.1 GenPept UniProtKB/Swiss-Prot:Q2VB19

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