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    APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 481788, updated on 5-Mar-2024

    Summary

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    Official Symbol
    APOBEC2provided by VGNC
    Official Full Name
    apolipoprotein B mRNA editing enzyme catalytic subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:37996
    See related
    Ensembl:ENSCAFG00845014792
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (10287773..10299455)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (9838514..9850209)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (9996527..10008237)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (9820060..9831740)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (9901879..9913563)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene unc-5 family C-terminal like Neighboring gene translocator protein 2 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene uncharacterized LOC119874160 Neighboring gene adenylate cyclase 10, soluble pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C->U-editing enzyme APOBEC-2
    XP_038347702.1
    XP_038409927.1
    XP_038473796.1
    XP_038539389.1
    XP_538909.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      10287773..10299455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038683461.1 → XP_038539389.1  C->U-editing enzyme APOBEC-2

      UniProtKB/TrEMBL
      A0A8C0K5I1, A0A8C0MII3, A0A8I3P3P2
      Related
      ENSCAFP00845020840.1, ENSCAFT00845026445.1
      Conserved Domains (1) summary
      pfam18778
      Location:46 → 223
      NAD1; Novel AID APOBEC clade 1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      9820060..9831740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038491774.1 → XP_038347702.1  C->U-editing enzyme APOBEC-2

      Conserved Domains (1) summary
      pfam18778
      Location:46 → 223
      NAD1; Novel AID APOBEC clade 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      9901879..9913563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038617868.1 → XP_038473796.1  C->U-editing enzyme APOBEC-2

      Conserved Domains (1) summary
      pfam18778
      Location:46 → 223
      NAD1; Novel AID APOBEC clade 1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      9996527..10008237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038553999.1 → XP_038409927.1  C->U-editing enzyme APOBEC-2

      UniProtKB/TrEMBL
      A0A8C0K5I1, A0A8C0MII3, A0A8I3P3P2
      Conserved Domains (1) summary
      pfam18778
      Location:46 → 223
      NAD1; Novel AID APOBEC clade 1

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      9838514..9850209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_538909.7 → XP_538909.3  C->U-editing enzyme APOBEC-2

      UniProtKB/TrEMBL
      A0A8C0K5I1, A0A8C0MII3, A0A8I3P3P2
      Conserved Domains (1) summary
      pfam18778
      Location:46 → 223
      NAD1; Novel AID APOBEC clade 1
    Nucleotide Protein
    Heading Accession and Version

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