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    Fndc10 fibronectin type III domain containing 10 [ Mus musculus (house mouse) ]

    Gene ID: 230991, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Fndc10provided by MGI
    Official Full Name
    fibronectin type III domain containing 10provided by MGI
    Primary source
    MGI:MGI:2444790
    See related
    Ensembl:ENSMUSG00000074738 AllianceGenome:MGI:2444790
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNCb-3966; B930041F14Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    Location:
    4 E2; 4 87.03 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (155778775..155780942)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (155694342..155696485)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 11B Neighboring gene matrix metallopeptidase 23 Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene STARR-seq mESC enhancer starr_12269 Neighboring gene STARR-seq mESC enhancer starr_12270 Neighboring gene STARR-seq mESC enhancer starr_12271 Neighboring gene STARR-positive B cell enhancer ABC_E6297 Neighboring gene STARR-seq mESC enhancer starr_12272 Neighboring gene Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) Neighboring gene STARR-seq mESC enhancer starr_12273 Neighboring gene predicted gene, 22573 Neighboring gene RIKEN cDNA 1500002C15 gene Neighboring gene transmembrane protein 240

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fibronectin type III domain-containing protein 10
    Names
    fibronectin type-III domain-containing transmembrane protein C1orf233 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178699.5 → NP_848814.3  fibronectin type III domain-containing protein 10 precursor

      See identical proteins and their annotated locations for NP_848814.3

      Status: VALIDATED

      Source sequence(s)
      AL627405, AL670236
      Consensus CDS
      CCDS57321.1
      UniProtKB/Swiss-Prot
      A2A9Q0, Q8BXK6
      Related
      ENSMUSP00000096871.3, ENSMUST00000099265.3
      Conserved Domains (1) summary
      pfam17742
      Location:24 → 223
      DUF5579; Family of unknown function (DUF5579)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      155778775..155780942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253513.1 → XP_030109373.1  fibronectin type III domain-containing protein 10 isoform X1

      UniProtKB/Swiss-Prot
      A2A9Q0, Q8BXK6
      Conserved Domains (1) summary
      pfam17742
      Location:24 → 223
      DUF5579; Family of unknown function (DUF5579)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2A9Q0.1 GenPept UniProtKB/Swiss-Prot:A2A9Q0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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