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    Slc5a4b solute carrier family 5 (neutral amino acid transporters, system A), member 4b [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294342, updated on 29-Feb-2024

    Summary

    Symbol
    Slc5a4bprovided by RGD
    Full Name
    solute carrier family 5 (neutral amino acid transporters, system A), member 4bprovided by RGD
    Primary source
    RGD:1309867
    See related
    Ensembl:ENSRNOG00000001298 AllianceGenome:RGD:1309867
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in glucose transmembrane transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 3.9) and Liver (RPKM 1.0) See more
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    Genomic context

    See Slc5a4b in Genome Data Viewer
    Location:
    20p12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (12558993..12608587)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (12559545..12609133)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (13498926..13547945)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 2 Neighboring gene microRNA 678 Neighboring gene solute carrier family 5 member 4 Neighboring gene U2 spliceosomal RNA Neighboring gene zinc finger protein 280B Neighboring gene ribosomal protein L13 like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    solute carrier family 5 member 4; solute carrier family 5a member 4b
    Names
    low affinity sodium-glucose cotransporter
    low affinity sodium-glucose cotransporter-like
    sodium-glucose cotransporter 3-b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      12558993..12608587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008772932.4XP_008771154.1  solute carrier family 5 member 4

      UniProtKB/TrEMBL
      F1LQV2
      Related
      ENSRNOP00000044352.6
      Conserved Domains (1) summary
      cl00456
      Location:27660
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain